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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 718 395

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

    C++ 408 100

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 348 89

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 258 152

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 155 97

  6. FMM3D FMM3D Public

    Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in thre…

    Fortran 141 52

Repositories

Showing 10 of 225 repositories
  • numbl Public

    Numerical computing environment that aims to be compatible with Matlab

    flatironinstitute/numbl’s past year of commit activity
    TypeScript 3 Apache-2.0 0 10 2 Updated Mar 16, 2026
  • jaxmg Public

    JAXMg: A multi-GPU linear solver in JAX

    flatironinstitute/jaxmg’s past year of commit activity
    Cuda 45 Apache-2.0 2 1 0 Updated Mar 16, 2026
  • adapol Public

    Adaptive Pole Fitting for Quantum Many-Body Physics

    flatironinstitute/adapol’s past year of commit activity
    Jupyter Notebook 12 GPL-3.0 4 1 0 Updated Mar 16, 2026
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

    flatironinstitute/finufft’s past year of commit activity
    C++ 408 100 40 (3 issues need help) 5 Updated Mar 16, 2026
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 63 Apache-2.0 14 50 7 Updated Mar 16, 2026
  • DMK-MC Public

    DMK for Monte Carlo Simulation https://arxiv.org/abs/2601.09288

    flatironinstitute/DMK-MC’s past year of commit activity
    C++ 3 MIT 1 0 0 Updated Mar 16, 2026
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    flatironinstitute/jax-finufft’s past year of commit activity
    C++ 121 Apache-2.0 11 14 2 Updated Mar 16, 2026
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 56 Apache-2.0 1 11 (2 issues need help) 1 Updated Mar 16, 2026
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 128 MIT 18 124 (1 issue needs help) 9 Updated Mar 14, 2026
  • flathub Public

    A simple elasticsearch frontend for serving astrophysical simulation catalog data

    flatironinstitute/flathub’s past year of commit activity
    Haskell 10 Apache-2.0 8 14 0 Updated Mar 14, 2026
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