tag:github.com,2008:https://github.com/intermine/intermine/releases 2022-08-26T18:29:26Z tag:github.com,2008:Repository/4858466/intermine-5.1.0 2022-08-26T18:33:01Z <p><a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="416859397" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2025" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2025/hovercard" href="https://github.com/intermine/intermine/issues/2025">#2025</a> - FAIR: PURLs come from config file<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="551499250" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2183" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2183/hovercard" href="https://github.com/intermine/intermine/issues/2183">#2183</a> - Improve external links using Identifiers.org<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="665122656" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2287" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2287/hovercard" href="https://github.com/intermine/intermine/issues/2287">#2287</a> - Export query result in RDF format<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="894442620" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2365" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2365/hovercard" href="https://github.com/intermine/intermine/issues/2365">#2365</a> - Setting a property to postprocess in project.xml does not work<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="894448011" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2366" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2366/hovercard" href="https://github.com/intermine/intermine/issues/2366">#2366</a> - Generating intermine R2RML mapping<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="916440061" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2378" data-hovercard-type="pull_request" data-hovercard-url="/intermine/intermine/pull/2378/hovercard" href="https://github.com/intermine/intermine/pull/2378">#2378</a> - Update SolrKeywordSearchHandler (thanks <a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/sammyjava/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/sammyjava">@sammyjava</a>)<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="918904179" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2379" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2379/hovercard" href="https://github.com/intermine/intermine/issues/2379">#2379</a> - RDF representation for single entity<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="923858198" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2381" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2381/hovercard" href="https://github.com/intermine/intermine/issues/2381">#2381</a> - Add a new webservice to allow BG to RDF representation<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="932504936" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2382" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2382/hovercard" href="https://github.com/intermine/intermine/issues/2382">#2382</a> - Add reccomended properties to Gene and Protein Bioschemas profiles<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="946243838" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2389" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2389/hovercard" href="https://github.com/intermine/intermine/issues/2389">#2389</a> - Improve term assigned to the intermine entity<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="946253075" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2390" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2390/hovercard" href="https://github.com/intermine/intermine/issues/2390">#2390</a> - Apply ontology terms to the attributes too<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="947756640" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2391" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2391/hovercard" href="https://github.com/intermine/intermine/issues/2391">#2391</a> - Missing term applied to the additions file after merging</p> danielabutano tag:github.com,2008:Repository/4858466/intermine-5.0.8 2022-06-23T11:05:13Z <p>Improvements to prevent cross site scripting in the lecagy interface (Thanks Asher Pasha and Joe Carlson)</p> danielabutano tag:github.com,2008:Repository/4858466/intermine-5.0.7 2022-04-27T14:47:39Z <p><a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1100280116" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2419" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2419/hovercard" href="https://github.com/intermine/intermine/issues/2419">#2419</a> - Updated the WS /templates to return dataTypes<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1166545195" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2425" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2425/hovercard" href="https://github.com/intermine/intermine/issues/2425">#2425</a> - Fix XSS issue<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1200225002" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2427" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2427/hovercard" href="https://github.com/intermine/intermine/issues/2427">#2427</a> - Create a WS returning all the templates<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1202015136" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2428" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2428/hovercard" href="https://github.com/intermine/intermine/issues/2428">#2428</a> - Superuser can run whatever template<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="417851601" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2027" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2027/hovercard" href="https://github.com/intermine/intermine/issues/2027">#2027</a> - Added a new generic TSV data source</p> <ul> <li>Completly removed dependencies on jcenter</li> <li>Added pombe organims to the taxon id to be ingnored by the idresolver</li> <li>Copyright updated</li> <li>Fixed typo in the go evidence code</li> </ul> danielabutano tag:github.com,2008:Repository/4858466/intermine-5.0.6 2022-01-07T13:46:06Z <p><a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1087907478" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2414" data-hovercard-type="pull_request" data-hovercard-url="/intermine/intermine/pull/2414/hovercard" href="https://github.com/intermine/intermine/pull/2414">#2414</a> - Upgraded psi lib version (thanks <a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/asherpasha/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/asherpasha">@asherpasha</a>)<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1090528225" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2416" data-hovercard-type="pull_request" data-hovercard-url="/intermine/intermine/pull/2416/hovercard" href="https://github.com/intermine/intermine/pull/2416">#2416</a> - Log4j upgraded to 2.17.1 (thanks <a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/asherpasha/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/asherpasha">@asherpasha</a>)</p> danielabutano tag:github.com,2008:Repository/4858466/intermine-5.0.5 2021-12-23T07:27:19Z <p><a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1086253674" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2411" data-hovercard-type="pull_request" data-hovercard-url="/intermine/intermine/pull/2411/hovercard" href="https://github.com/intermine/intermine/pull/2411">#2411</a> - Log4j-1x compatibility upgrade (thanks <a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/asherpasha/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/asherpasha">@asherpasha</a>)</p> danielabutano tag:github.com,2008:Repository/4858466/intermine-5.0.4 2021-12-16T14:57:14Z <p><a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="806500370" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2324" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2324/hovercard" href="https://github.com/intermine/intermine/issues/2324">#2324</a> - Remove dependency from EBI maven nexus repo<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="910611775" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2377" data-hovercard-type="pull_request" data-hovercard-url="/intermine/intermine/pull/2377/hovercard" href="https://github.com/intermine/intermine/pull/2377">#2377</a> - Updated GFF3Record (thanks <a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/sammyjava/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/sammyjava">@sammyjava</a>)<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1060170864" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2396" data-hovercard-type="pull_request" data-hovercard-url="/intermine/intermine/pull/2396/hovercard" href="https://github.com/intermine/intermine/pull/2396">#2396</a> - Biogrid extension<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="971717575" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2392" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2392/hovercard" href="https://github.com/intermine/intermine/issues/2392">#2392</a> - Public name can be taken by deleted account<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1062252903" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2397" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2397/hovercard" href="https://github.com/intermine/intermine/issues/2397">#2397</a> - Implement a new WS to summarise templates<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1062253378" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2398" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2398/hovercard" href="https://github.com/intermine/intermine/issues/2398">#2398</a> - Implement a new WS to precompute templates<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1062259073" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2399" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2399/hovercard" href="https://github.com/intermine/intermine/issues/2399">#2399</a> - Update the GET /templates WS to show which templates user can make change<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1062287804" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2400" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2400/hovercard" href="https://github.com/intermine/intermine/issues/2400">#2400</a> - Update the PUT /bluegenes-properties WS to use body<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1068593542" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2402" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2402/hovercard" href="https://github.com/intermine/intermine/issues/2402">#2402</a> - WebProperties WS returns blugenes properties too<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1072262253" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2404" data-hovercard-type="pull_request" data-hovercard-url="/intermine/intermine/pull/2404/hovercard" href="https://github.com/intermine/intermine/pull/2404">#2404</a> - Update CI to use Python 3.7</p> danielabutano tag:github.com,2008:Repository/4858466/humanmine-11 2021-11-15T11:09:08Z <p>Merge pull request <a class="issue-link js-issue-link" href="https://github.com/intermine/intermine/pull/2395">#2395</a> from danielabutano/psi</p> <p>pointing to more stable ebi repo see <a class="issue-link js-issue-link" href="https://github.com/intermine/intermine/issues/2324">#2324</a></p> sergiocontrino tag:github.com,2008:Repository/4858466/flymine-52 2021-09-22T15:47:59Z <p>chado-db parsing for flybase updated for the new flybase types</p> sergiocontrino tag:github.com,2008:Repository/4858466/intermine-5.0.3 2021-06-30T17:24:22Z <p>Patch release to fix Enrichment widget<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="901259586" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2375" data-hovercard-type="pull_request" data-hovercard-url="/intermine/intermine/pull/2375/hovercard" href="https://github.com/intermine/intermine/pull/2375">#2375</a> - Update interpro_keys.properties<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="901259753" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2376" data-hovercard-type="pull_request" data-hovercard-url="/intermine/intermine/pull/2376/hovercard" href="https://github.com/intermine/intermine/pull/2376">#2376</a> - Update interpro-go_keys.properties<br> <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="932564311" data-permission-text="Title is private" data-url="https://github.com/intermine/intermine/issues/2384" data-hovercard-type="issue" data-hovercard-url="/intermine/intermine/issues/2384/hovercard" href="https://github.com/intermine/intermine/issues/2384">#2384</a> - Enrichment widget not working when changing background population</p> danielabutano tag:github.com,2008:Repository/4858466/humanmine-10 2021-06-25T09:56:22Z <p>Merge pull request <a class="issue-link js-issue-link" href="https://github.com/intermine/intermine/pull/2375">#2375</a> from sammyjava/patch-10</p> <p>Update interpro_keys.properties</p> sergiocontrino