Hello! My name is Jean-Paul R. Soucy and I am a data scientist working in healthcare in Montreal, Canada. You can find my personal website at jprs.me and my links-and-notes blog at Big Muddy.
- COVID-19 Canada Open Data Working Group
- Python & R packages
- Reproducible research
- Presentations & workshops
- Miscellaneous
Software packages are highlighted with code text.
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- Covid19Canada: The original COVID-19 Canada Open Data Working Group dataset
- CovidTimelineCanada: The Timeline of COVID-19 in Canada, a definitive COVID-19 dataset for Canada
- Covid19CanadaArchive: The Canadian COVID-19 Data Archive
- Covid19CanadaBot,
Covid19CanadaETL,Covid19CanadaDataProcess,Covid19CanadaData: Automated COVID-19 data collection pipeline
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- Covid19CanadaArchive-data-explorer: Data explorer for the Canadian COVID-19 Data Archive
- CovidTimelineCanada-js-dashboard: A simple JS dashboard for the Timeline of COVID-19 in Canada Dataset
- Covid19CanadaDashboard: The original COVID-19 Canada Open Data Working Group dashboard
- Covid19CanadaAPI: Python-based API for the COVID-19 Canada Open Data Working Group dataset
- WhatHappenedCovid19InCanada: Landing page for the What Happened? COVID-19 in Canada project
- CovidDataStandard
- CovidStoriesCanada
- FAIR COVID-19 Data for 🇨🇦
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In addition to the COVID-19 data automation pipeline described above, I have also created the following R and Python packages:
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Wherever possible, I aim to publish reproducible research with open data:
- covid-19-mobility: Public transit mobility as a leading indicator of COVID-19 transmission in 40 cities during the first wave of the pandemic
- covid-19-antibiotic: Antibiotic prescribing in patients with COVID-19: A rapid review and meta-analysis
- ccodwg-scientific-data: A sub-national real-time epidemiological and vaccination database for the COVID-19 pandemic in Canada
- covid-19-coinfection-metaregression: Predictors and Microbiology of Co-Infection in Patients with COVID-19: Living Rapid Review Update and Meta-Regression
- california-counties-suicide-and-temperature: The Effect of Average Temperature on Suicide Rates in Five Urban California Counties, 1999–2019: An Ecological Time Series Analysis
- covid-19-patients-amr-meta-analysis: Antimicrobial resistance in patients with COVID-19: a systematic review and meta-analysis
- covid-19-amr-meta-analysis: Antibiotic resistance associated with the COVID-19 pandemic: a systematic review and meta-analysis
- covid-19-mobility-responsiveness: Characterizing responsiveness to the COVID-19 pandemic in the United States and Canada using mobility data
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- cssc-2021-r-shiny-workshop: What makes R Shiny so shiny? A step-by-step introduction to interactive dashboards in R (2021)
- dlsph-student-conf-2022-web-scraping-workshop: Web scraping for public health (2022)
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Find my GitHub gists here.