derSupplement

Supplementary material for the derfinder software paper

Paper supplementary files

View the PDF (that is not included in the NAR files, only the source files) at derfinder_supplement.pdf

Name		Name	Last commit message	Last commit date
Latest commit History 236 Commits
additional-analyses		additional-analyses
brainspan		brainspan
figure-expressed-regions		figure-expressed-regions
figure-single-base		figure-single-base
gtex		gtex
simulation		simulation
timing		timing
venn		venn
.gitignore		.gitignore
.nojekyll		.nojekyll
LICENSE		LICENSE
README.md		README.md
check-analysis-time.R		check-analysis-time.R
derfinder_supplement.pdf		derfinder_supplement.pdf
index.Rmd		index.Rmd
index.bib		index.bib
index.html		index.html
run-all.sh		run-all.sh
step1-fullCoverage.R		step1-fullCoverage.R
step1-fullCoverage.sh		step1-fullCoverage.sh
step10-region_cuts.R		step10-region_cuts.R
step10-region_cuts.sh		step10-region_cuts.sh
step10b-region_cuts-merge.R		step10b-region_cuts-merge.R
step2-makeModels.R		step2-makeModels.R
step2-makeModels.sh		step2-makeModels.sh
step3-analyzeChr.R		step3-analyzeChr.R
step3-analyzeChr.sh		step3-analyzeChr.sh
step4-mergeResults.sh		step4-mergeResults.sh
step5-derfinderReport.sh		step5-derfinderReport.sh
step6-regionMatrix.R		step6-regionMatrix.R
step6-regionMatrix.sh		step6-regionMatrix.sh
step6b-regionMatrix-merge.R		step6b-regionMatrix-merge.R
step7-regMatVsDERs.R		step7-regMatVsDERs.R
step7-regMatVsDERs.Rmd		step7-regMatVsDERs.Rmd
step7-regMatVsDERs.sh		step7-regMatVsDERs.sh
step8-coverageToExon.R		step8-coverageToExon.R
step8-coverageToExon.sh		step8-coverageToExon.sh
step9-summaryInfo.R		step9-summaryInfo.R
step9-summaryInfo.Rmd		step9-summaryInfo.Rmd
step9-summaryInfo.sh		step9-summaryInfo.sh