Tags from spVCF

v1.3.2

2023-10-29T01:05:32Z

v1.3.1

2023-10-02T08:24:26Z

--with-missing-fields: pad AD & PL to expected vector length (#29)

For now all sites must be biallelic. (Can be generalized in the future.)

v1.3.0

2023-06-04T04:17:12Z

add --with-missing-fields decoder option (#28)

In each cell, appends `:.` for each omitted, trailing FORMAT field. Faster than piping through `bcftools view` to achieve the same.

v1.2.0

2022-01-07T09:14:22Z

v1.1.0

2020-12-27T07:34:54Z

v1.0.0 🍾

2020-12-27T07:33:38Z

20201226

2020-12-27T07:38:11Z

release candidate

2019-03-14T05:44:53Z

Don't quote-encode cells whose genotypes aren't reference-identical or non-called

2018-10-02T06:01:37Z

Spec change: never quote-encode cells whose genotypes aren't referenc…

…e-identical or non-called

This ensures all non-reference genotypes on a row can be read without reference to any previous row, a significant convenience in exchange for a negligible size increase.

v0.5.0: Multithreaded encoder (#13)

2018-08-29T08:36:13Z

Multithreaded encoder (#13)

The encoder can run multithreaded by buffering batches of input lines and processing each batch in a worker thread. In favorable circumstances this yields higher throughput than the default single-threaded approach, but there is a trade-off of greatly increased memory usage and copying. Activated with -t,--threads.