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@RasmussenLab

RasmussenLab

The Rasmussen group focuses on proteome and genome variation, coding variation and deep learning for integration of genomics, proteomics and clinical data.

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  1. vamb vamb Public

    Variational autoencoder for metagenomic binning

    Python 318 49

  2. MOVE MOVE Public

    MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations

    Jupyter Notebook 91 33

  3. phamb phamb Public

    Downstream processing of VAMB binning for Viral Elucidation

    Python 54 7

  4. pimms pimms Public

    Imputing proteomics data using deep learning models

    Jupyter Notebook 32 3

  5. PlasMAAG PlasMAAG Public

    PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples

    Python 22 2

  6. IntroToML IntroToML Public

    Forked from Center-for-Health-Data-Science/IntroToML

    Machine Learning course at Copenhagen University, Faculty of Health and Medical Sciences, Center for Health Data Science

    Jupyter Notebook 4

Repositories

Showing 10 of 40 repositories
  • PlasMAAG Public

    PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples

    RasmussenLab/PlasMAAG’s past year of commit activity
    Python 22 MIT 2 4 0 Updated Mar 16, 2026
  • pimms Public

    Imputing proteomics data using deep learning models

    RasmussenLab/pimms’s past year of commit activity
    Jupyter Notebook 32 GPL-3.0 3 6 1 Updated Mar 14, 2026
  • DoBSeqWF Public

    Workflow for analysing two-dimensional overlapped pooled sequencing data

    RasmussenLab/DoBSeqWF’s past year of commit activity
    Nextflow 1 MIT 0 0 0 Updated Mar 9, 2026
  • vamb Public

    Variational autoencoder for metagenomic binning

    RasmussenLab/vamb’s past year of commit activity
    Python 318 MIT 49 48 7 Updated Feb 23, 2026
  • TaxVamb-Benchmarks Public

    Snakemake workflow for evaluating MAG binning tools with CheckM2 and GUNC quality assessment for the TaxVamb paper

    RasmussenLab/TaxVamb-Benchmarks’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Feb 23, 2026
  • HAPI Public

    Script to run HAPI (Haplotype-Aware Probabilistic model for Indels) to identify the CCR5delta32 deletion in ancient low coverage dna samples

    RasmussenLab/HAPI’s past year of commit activity
    Python 2 MIT 1 0 0 Updated Feb 2, 2026
  • taxconverter Public

    Unifies the presentation of taxonomic classifiers output

    RasmussenLab/taxconverter’s past year of commit activity
    Python 4 MIT 1 4 1 Updated Feb 2, 2026
  • git-tutorial Public Forked from betatim/vscode-binder

    VS Code on Binder

    RasmussenLab/git-tutorial’s past year of commit activity
    Python 1 BSD-3-Clause 73 1 0 Updated Nov 11, 2025
  • njab Public

    Not just another biomarkers: Functionality for biomarker discovery

    RasmussenLab/njab’s past year of commit activity
    Python 2 MIT 1 1 0 Updated Sep 20, 2025
  • VAEs_for_biomedical_data_integration Public

    This is the repository for the paper "On the use of VAEs for biomedical data integration".

    RasmussenLab/VAEs_for_biomedical_data_integration’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Aug 13, 2025
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