Vedran Miletić activity https://gitlab.com/vedranmiletic 2026-03-19T11:23:28Z tag:gitlab.com,2026-03-19:5221665622 Vedran Miletić commented on merge request !4119 at GROMACS / GROMACS 2026-03-19T11:23:28Z vedranmiletic Vedran Miletić

+1

tag:gitlab.com,2026-03-18:5219252542 Vedran Miletić commented on merge request !5307 at GROMACS / GROMACS 2026-03-18T19:46:50Z vedranmiletic Vedran Miletić

@acmnpv where's the AMD Clang ROCm 7.1.0 build used? The post-merge I triggered doesn't have it: https://gitlab.com/gromacs/gromacs/-/pipelines/2394123119

tag:gitlab.com,2026-03-18:5219058901 Vedran Miletić pushed to project branch vmm-transitive-includes-check at GROMACS / GROMACS 2026-03-18T18:44:23Z vedranmiletic Vedran Miletić

Vedran Miletić (a7aff181) at 18 Mar 18:44

Jump over to team red in attempt to avoid post-merge failure

tag:gitlab.com,2026-03-17:5212090580 Vedran Miletić approved merge request !5745: Modernize data types used in CMAP implementation at GROMACS / GROMACS 2026-03-17T10:30:42Z vedranmiletic Vedran Miletić
tag:gitlab.com,2026-03-16:5209153412 Vedran Miletić approved merge request !5842: Add hover tooltips for citations in online manual at GROMACS / GROMACS 2026-03-16T16:15:45Z vedranmiletic Vedran Miletić

Adds gmxcitations Sphinx extension that parses references.rst and injects citation text as hover tooltips on citation links via CSS.

sphinx-hoverxref was considered but requires Read the Docs hosting; this approach is fully static and works on manual.gromacs.org.

Fixes #4913

tag:gitlab.com,2026-03-16:5208791675 Vedran Miletić commented on issue #5555 at GROMACS / GROMACS 2026-03-16T14:59:48Z vedranmiletic Vedran Miletić

I believe the result was the same.

tag:gitlab.com,2026-03-16:5208035956 Vedran Miletić commented on merge request !5842 at GROMACS / GROMACS 2026-03-16T12:25:21Z vedranmiletic Vedran Miletić

This works without JavaScript, but you still added a placeholder JS file, why?

tag:gitlab.com,2026-03-16:5208024575 Vedran Miletić commented on merge request !5745 at GROMACS / GROMACS 2026-03-16T12:22:54Z vedranmiletic Vedran Miletić

Might be nitpicking here, but I find this unidiomatic and would prefer something along the lines of:

cmapType.atomTypes_[i] = std::move(cmapBondAtomType.value());
cmapBondAtomType.reset();
tag:gitlab.com,2026-03-16:5207977202 Vedran Miletić commented on merge request !5745 at GROMACS / GROMACS 2026-03-16T12:12:34Z vedranmiletic Vedran Miletić

Nit: probably not necessary?

tag:gitlab.com,2026-03-16:5207973453 Vedran Miletić commented on merge request !5745 at GROMACS / GROMACS 2026-03-16T12:11:43Z vedranmiletic Vedran Miletić

Yep, good catch

tag:gitlab.com,2026-03-16:5207910015 Vedran Miletić commented on merge request !5745 at GROMACS / GROMACS 2026-03-16T11:57:00Z vedranmiletic Vedran Miletić

Nice!

tag:gitlab.com,2026-03-16:5207600100 Vedran Miletić pushed to project branch vmm-add-missing-cstdint-header at GROMACS / GROMACS 2026-03-16T10:46:01Z vedranmiletic Vedran Miletić

Vedran Miletić (a6a84751) at 16 Mar 10:46

Added missing cstdint header

tag:gitlab.com,2026-03-16:5207517049 Vedran Miletić pushed to project branch ma-cmap-use-modern-data-structures-in-grompp at GROMACS / GROMACS 2026-03-16T10:28:41Z vedranmiletic Vedran Miletić

Vedran Miletić (e8b8c9bb) at 16 Mar 10:28

Apply 2 suggestion(s) to 2 file(s)

... and 65 more commits

tag:gitlab.com,2026-03-16:5207508560 Vedran Miletić pushed to project branch vmm-transitive-includes-check at GROMACS / GROMACS 2026-03-16T10:26:55Z vedranmiletic Vedran Miletić

Vedran Miletić (f6c8755b) at 16 Mar 10:26

Not debug but release with debug info

... and 47 more commits

tag:gitlab.com,2026-03-16:5207484708 Vedran Miletić commented on merge request !4119 at GROMACS / GROMACS 2026-03-16T10:22:06Z vedranmiletic Vedran Miletić

As I said earlier, I prefer that we ship AMBER19SB-IUPAC. I left some more review comments.

tag:gitlab.com,2026-03-16:5207479440 Vedran Miletić commented on merge request !4119 at GROMACS / GROMACS 2026-03-16T10:20:49Z vedranmiletic Vedran Miletić

Perhaps "Amber ff19SB with original/IUPAC hydrogen naming"?

tag:gitlab.com,2026-03-16:5207473175 Vedran Miletić commented on merge request !4119 at GROMACS / GROMACS 2026-03-16T10:19:17Z vedranmiletic Vedran Miletić

Could you rather write "if tp is 6" in chemical terms?

tag:gitlab.com,2026-03-16:5207466239 Vedran Miletić commented on merge request !4119 at GROMACS / GROMACS 2026-03-16T10:17:38Z vedranmiletic Vedran Miletić

Nit: revert deletion of this line

tag:gitlab.com,2026-03-16:5207459905 Vedran Miletić commented on merge request !4119 at GROMACS / GROMACS 2026-03-16T10:16:08Z vedranmiletic Vedran Miletić

This should be moved to 2027

tag:gitlab.com,2026-03-16:5207103960 Vedran Miletić opened merge request !5843: Added missing cstdint header at GROMACS / GROMACS 2026-03-16T08:56:23Z vedranmiletic Vedran Miletić