https://holtlab.net microbial genomics Wed, 29 Apr 2020 08:34:56 +0000 en hourly 1 http://wordpress.com/ https://s0.wp.com/i/buttonw-com.png https://holtlab.net https://holtlab.net/2020/04/15/how-to-make-a-new-covid-19-vaccine-starting-from-scratch/ https://holtlab.net/2020/04/15/how-to-make-a-new-covid-19-vaccine-starting-from-scratch/#respond Wed, 15 Apr 2020 08:31:48 +0000 http://holtlab.net/?p=1227 https://holtlab.net/2020/04/15/how-to-make-a-new-covid-19-vaccine-starting-from-scratch/feed/ 0 bacpathgenomics https://holtlab.net/2018/11/12/highlights-from-smbe-satellite-workshop-in-kyoto/ https://holtlab.net/2018/11/12/highlights-from-smbe-satellite-workshop-in-kyoto/#comments Mon, 12 Nov 2018 09:25:22 +0000 http://holtlab.net/?p=1111 https://holtlab.net/2018/11/12/highlights-from-smbe-satellite-workshop-in-kyoto/feed/ 1 bacpathgenomics https://holtlab.net/2018/08/21/amr-distribution-in-intestinal-e-coli-from-children-in-asia-and-africa/ https://holtlab.net/2018/08/21/amr-distribution-in-intestinal-e-coli-from-children-in-asia-and-africa/#respond Tue, 21 Aug 2018 03:12:23 +0000 http://holtlab.net/?p=1080 https://holtlab.net/2018/08/21/amr-distribution-in-intestinal-e-coli-from-children-in-asia-and-africa/feed/ 0 bacpathgenomics aEPEC_distribution AMR_classes genewise case control Screen Shot 2018-08-21 at 12.59.41 pm.png Screen Shot 2018-08-21 at 1.00.28 pm aEPEC_tree clone DAPC region DAPC region gene prevalence drug res and usage cipR gyrA parC geno_pheno https://holtlab.net/2017/07/01/update-to-comparative-bacterial-genomics-tutorial/ https://holtlab.net/2017/07/01/update-to-comparative-bacterial-genomics-tutorial/#respond Sat, 01 Jul 2017 02:45:26 +0000 http://holtlab.net/?p=953 https://holtlab.net/2017/07/01/update-to-comparative-bacterial-genomics-tutorial/feed/ 0 bacpathgenomics https://holtlab.net/2016/10/12/global-picture-typhoid/ https://holtlab.net/2016/10/12/global-picture-typhoid/#respond Wed, 12 Oct 2016 06:23:40 +0000 http://holtlab.net/?p=152 https://holtlab.net/2016/10/12/global-picture-typhoid/feed/ 0 bacpathgenomics FigS1_GlobalTreeColouredByHgroups Fig1_noH58_clade_colours_subcladebg_190515_labelled_ED.png subcladerect Fig1c_worldmap_pies_subclades Screen Shot 2016-08-29 at 11.47.15 pm.png Screen Shot 2016-08-29 at 11.32.21 pm.png tree.png journal-pntd-0004781-g001 https://holtlab.net/2016/03/19/elizabethkingia-anophelis/ https://holtlab.net/2016/03/19/elizabethkingia-anophelis/#comments Sat, 19 Mar 2016 05:42:32 +0000 http://holtlab.net/?p=390 https://holtlab.net/2016/03/19/elizabethkingia-anophelis/feed/ 2 bacpathgenomics SpeciesTree_OutbreakTree2 Screen Shot 2016-03-19 at 4.21.25 pm SRR3240413_bandage_graph Screen Shot 2016-03-19 at 7.24.21 pm Screen Shot 2016-03-19 at 8.26.50 pm scaffolds_resolved_blast2.png SRR3240412_RedDogTree species_tree_with_NCTC10588 https://holtlab.net/2016/01/19/genomics-of-atypical-enteropathogenic-e-coli/ https://holtlab.net/2016/01/19/genomics-of-atypical-enteropathogenic-e-coli/#respond Tue, 19 Jan 2016 02:32:32 +0000 http://holtlab.net/?p=362 https://holtlab.net/2016/01/19/genomics-of-atypical-enteropathogenic-e-coli/feed/ 0 bacpathgenomics Supplementary Figure 1 aEPEC_distribution Screen Shot 2016-01-19 at 9.46.45 am Screen Shot 2016-01-19 at 9.50.41 am aEPEC_tree_LEE_subtypes https://holtlab.net/2016/01/17/microbial-genomics-methods/ https://holtlab.net/2016/01/17/microbial-genomics-methods/#respond Sun, 17 Jan 2016 07:38:27 +0000 http://holtlab.net/?p=278 https://holtlab.net/2016/01/17/microbial-genomics-methods/feed/ 0 bacpathgenomics tools word cloud https://holtlab.net/2016/01/12/tracking-down-insertion-sequences-causing-polymixin-resistance-in-acinetobacter-baumannii/ https://holtlab.net/2016/01/12/tracking-down-insertion-sequences-causing-polymixin-resistance-in-acinetobacter-baumannii/#comments Tue, 12 Jan 2016 08:21:04 +0000 http://holtlab.net/?p=266 https://holtlab.net/2016/01/12/tracking-down-insertion-sequences-causing-polymixin-resistance-in-acinetobacter-baumannii/feed/ 1 bacpathgenomics ISMapper results ISMapper results for GC1 Bandage screenshot Bandage screenshot Bandage Screen Shot Screen Shot 2016-01-12 at 6.58.17 pm https://holtlab.net/2015/10/03/plotting-trees-data/ https://holtlab.net/2015/10/03/plotting-trees-data/#respond Sat, 03 Oct 2015 00:20:33 +0000 http://holtlab.net/?p=245 https://holtlab.net/2015/10/03/plotting-trees-data/feed/ 0 bacpathgenomics pan Screen Shot 2015-12-15 at 4.43.05 pm Screen Shot 2015-12-15 at 4.47.34 pm