Comments for InterMine https://intermineorg.wordpress.com Open source data warehouse system for the integration and analysis of biological data. Mon, 26 Apr 2021 15:54:28 +0000 hourly 1 http://wordpress.com/ Comment on 🎉 BlueGenes 1.0.0 release 🎉 by yoyehudi https://intermineorg.wordpress.com/2021/04/23/%f0%9f%8e%89-bluegenes-1-0-0-release-%f0%9f%8e%89/comment-page-1/#comment-37 Mon, 26 Apr 2021 15:54:28 +0000 http://intermineorg.wordpress.com/?p=5904#comment-37 Wow, delighted to see this – congratulations!!!

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]]> Comment on Outreachy Internship blog: A beginner’s guide to Intermine Boot by yoyehudi https://intermineorg.wordpress.com/2020/07/03/outreachy-internship-blog-a-beginners-guide-to-intermine-boot/comment-page-1/#comment-36 Tue, 14 Jul 2020 09:55:19 +0000 http://intermineorg.wordpress.com/?p=5822#comment-36 Thanks, Marc – this is really very encouraging to read!

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]]> Comment on Outreachy Internship blog: A beginner’s guide to Intermine Boot by mdperry https://intermineorg.wordpress.com/2020/07/03/outreachy-internship-blog-a-beginners-guide-to-intermine-boot/comment-page-1/#comment-35 Fri, 03 Jul 2020 15:50:12 +0000 http://intermineorg.wordpress.com/?p=5822#comment-35 Very nice. I have been a sometime user of different mines for a long time (I used to be a Data Wrangler at the modENCODE DCC, and so modMine became like their terminal repository for a great deal of our data (and metadata, obviously). But I have always struggled a bit to get my head around the data model, and was frankly intimidated to looking under the hood, so to speak. [FULL disclosure: now that I work in Cancer Genomics I am an unabashed fan of HumanMine and use weekly if not daily for various analyses of genes and particularly gene lists].
A couple of years ago I taught myself how to create a private instance of cBioportal, and while not trivial, there was a reasonably good tutorial, and when it was finally working was kind of cool. I mention this because now that I know there are Docker containers for InterMine, and the other tools you mentioned, I think that for me, the energy barrier to creating a private mine for my projects is significantly lower (which means the probability of trying it is higher—sometimes it is hard to shed the jargon from my training as a Biochemist).
Keep up the good work(!)

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]]> Comment on Levelling up: From GSoC student to mentor by Adrián Rodríguez-Bazaga https://intermineorg.wordpress.com/2019/12/06/levelling-up-from-gsoc-student-to-mentor/comment-page-1/#comment-33 Fri, 06 Dec 2019 20:26:46 +0000 http://intermineorg.wordpress.com/?p=5626#comment-33 Nice, InterMine rocks! #nonbiasedcomment

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]]> Comment on InterMine 3.0 – Solr search by Google Summer of Code 2019 – it’s time to get your thinking caps on! – InterMine https://intermineorg.wordpress.com/2018/11/15/intermine-3-0-solr-search/comment-page-1/#comment-31 Fri, 23 Nov 2018 16:13:33 +0000 http://intermineorg.wordpress.com/?p=5381#comment-31 […] Fixing something that’s always bothered you – in 2018, we managed this with the Solr Search update! […]

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]]> Comment on InterMine 3.0 – Solr search by InterMine Releases – Winter 2018 Update (Solr, Strains and being more FAIR) – InterMine https://intermineorg.wordpress.com/2018/11/15/intermine-3-0-solr-search/comment-page-1/#comment-30 Fri, 16 Nov 2018 14:09:45 +0000 http://intermineorg.wordpress.com/?p=5381#comment-30 […] over the summer that was done as part of Google Summer of Code (Thanks again Arunan!). See our blog post for […]

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]]> Comment on GSoC Student Interview spotlight: Natural Language to InterMine Queries + Jake Macneal by GSoC 2018 Students Announced! 🌞☀️ – InterMine https://intermineorg.wordpress.com/2018/05/09/gsoc-student-interview-spotlight-natural-language-to-intermine-queries-jake-macneal/comment-page-1/#comment-29 Wed, 09 May 2018 15:50:09 +0000 http://intermineorg.wordpress.com/?p=5299#comment-29 […] Jake Macneal is going to work on a prototype to convert natural language questions into InterMine PathQuery – it would be exciting to have a user type “Show me all the genes associated with diabetes” into an InterMine, and get a sensible set of results back! Aaron Golden will mentor Jake. […]

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]]> Comment on GSoC Student Interview spotlight: Buzzbang Bioschemas search + Ankit Lohani by GSoC 2018 Students Announced! 🌞☀️ – InterMine https://intermineorg.wordpress.com/2018/05/04/gsoc-student-interview-spotlight-buzzbang-bioschemas-search-ankit-lohani/comment-page-1/#comment-28 Fri, 04 May 2018 14:25:12 +0000 http://intermineorg.wordpress.com/?p=5295#comment-28 […] Ankit Kumar Lohani will be working on Buzzbang – a search engine to crawl multiple biological sources including, but not exclusively, InterMine instances. Justin Clark-Casey will be Ankit’s mentor. […]

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]]> Comment on GSoC Student Interview spotlight: Cross InterMine Search Tool + Aman Dwivedi by GSoC 2018 Students Announced! 🌞☀️ – InterMine https://intermineorg.wordpress.com/2018/05/02/gsoc-student-interview-spotlight-cross-intermine-search-tool-aman-dwivedi/comment-page-1/#comment-27 Wed, 02 May 2018 14:26:20 +0000 http://intermineorg.wordpress.com/?p=5286#comment-27 […] Aman Dwivedi will be working on a Cross-InterMine search tool. This will use the registry to allow users to search multiple InterMines at once, and should be a good way to figure out which mine has the data you’re looking for. Aman will be mentored by Nadia Yudina, herself a graduate of one of last year’s InterMine+GSoC program. […]

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]]> Comment on GSoC Student Interview spotlight: ElasticSearch / Solr Project + Arunan Sugunakumar by GSoC 2018 Students Announced! 🌞☀️ – InterMine https://intermineorg.wordpress.com/2018/05/01/gsoc-student-interview-spotlight-elasticsearch-solr-project-arunan-sugunakumar/comment-page-1/#comment-26 Tue, 01 May 2018 14:10:42 +0000 http://intermineorg.wordpress.com/?p=5272#comment-26 […] Arunan Sugunakumar is going to explore hooking InterMine up to a more modern search package, probably Solr or ElasticSearch. Our current version of Lucene is very old, and we know there are better options out there!  Daniela Butano will mentor this project. […]

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