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@Teichlab

Teichmann Group

Sarah Teichmann's group at University of Cambridge: Cambridge Stem Cell Institute & Department of Medicine

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  1. celltypist celltypist Public

    A tool for semi-automatic cell type classification

    Python 464 59

  2. cellhint cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Python 120 16

  3. drug2cell drug2cell Public

    Gene group activity utility functions for Scanpy

    Jupyter Notebook 101 4

  4. bin2cell bin2cell Public

    Join subcellular Visium HD bins into cells

    Python 138 13

  5. Genes2Genes Genes2Genes Public

    Aligning gene expression trajectories of single-cell reference and query systems

    Jupyter Notebook 83 13

  6. cell2tcr cell2tcr Public

    Inference of TCR motifs

    Jupyter Notebook 32 3

Repositories

Showing 10 of 77 repositories
  • celltypist Public

    A tool for semi-automatic cell type classification

    Teichlab/celltypist’s past year of commit activity
    Python 464 MIT 59 46 3 Updated Mar 21, 2026
  • celltypist_wiki Public

    Materials and scripts for building cell type encyclopedia table

    Teichlab/celltypist_wiki’s past year of commit activity
    Python 20 3 0 0 Updated Mar 16, 2026
  • nichefinder Public

    Quantify spatial proximity patterns of cell types

    Teichlab/nichefinder’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Mar 9, 2026
  • cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Teichlab/cellhint’s past year of commit activity
    Python 120 MIT 16 6 0 Updated Mar 9, 2026
  • cell2home Public

    Analyse cell homing and migration in single-cell datasets

    Teichlab/cell2home’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 9, 2026
  • csd3-scripts Public

    Various utility scripts for CSD3 survival

    Teichlab/csd3-scripts’s past year of commit activity
    Python 1 0 0 0 Updated Feb 27, 2026
  • celcomen Public
    Teichlab/celcomen’s past year of commit activity
    Jupyter Notebook 24 GPL-3.0 3 0 0 Updated Feb 25, 2026
  • Teichlab/crohns-fibroblast-atlas’s past year of commit activity
    Jupyter Notebook 1 MIT 1 0 0 Updated Feb 20, 2026
  • gene2probe Public

    Pipeline for designing custom probes against human genes

    Teichlab/gene2probe’s past year of commit activity
    Jupyter Notebook 22 MIT 7 0 1 Updated Jan 30, 2026
  • sctk Public
    Teichlab/sctk’s past year of commit activity
    Python 47 GPL-3.0 8 1 1 Updated Jan 28, 2026