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Commits on Aug 4, 2024

• [misc] update citation and copyright

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  6ac098f

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Commits on Mar 21, 2023

• add searchbs and mkindexbs as proper commands

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  committed
  dba2169

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Commits on Nov 29, 2022

• seqan3::arg-parser → sharg

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Commits on Aug 17, 2022

• [nop] reformat

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  committed
  583f671

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Commits on May 13, 2022

• re-introduce half-exact-seeding and adapt to new SeqAn3

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  committed
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Commits on Jan 28, 2020

• [MISC] update copyright

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  committed
  0912b64

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• [MISC] lot's of cleanup

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  committed
  b5f113c

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• [MISC] create multiple translation units [step1]

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  8fbe250

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Commits on Dec 13, 2019

• Adapt to new SeqAn3 version, still has issues

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  f2c94b8

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Commits on Jul 18, 2019

• Lambda3 main (#130)

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  0b41d68

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Commits on Apr 5, 2019

• indexer ported to seqan3

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  committed
  ca74f59

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Commits on Mar 30, 2019

• Port argument parser from seqan2 to seqan3

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  committed
  4d7aa2e

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Commits on Jan 11, 2019

• update copyright year

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  committed
  40f5829

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Commits on Oct 18, 2017

• [API] refactoring almost done

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  committed
  e906eb7

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Commits on Oct 13, 2017

• [API] first big move-around and rename; single binary :+1:

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Commits on Jun 19, 2017

• [FIX] only catch exceptions in release mode

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  committed
  5c29d90

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Commits on Jun 16, 2017

• [INTERNAL] better exception handling

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  committed
  083efb8

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Commits on Jun 14, 2017

• [INTERNAL] hide microbenchmarking behind extra compile flag

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Commits on Jun 13, 2017

• [API] use super+ultra-blocks in FM; don't use prefix-sums for uni-dir.

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Commits on Feb 16, 2017

• [FEATURE] initial support for memory checks

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  2f1ad13

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Commits on Jan 24, 2017

• [INTERNAL] larger batches for SIMD, benefit still unclear

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  d22e095

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Commits on Jan 6, 2017

• [INTERNAL] resolve merge-conflict after merging master

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  committed
  4196218

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• [INTERNAL] update source code copyright headers

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  96c2490

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Commits on Jan 4, 2017

• [FIX] fix search with 0 errors

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  15d7632

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Commits on Jan 3, 2017

• [INTERNAL,CLI] unify codepaths; change default options; sd==0 still tobefixed

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  43f5948

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Commits on Nov 29, 2016

• [FEATURE] taxonomic binning works (beta)

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  2480541

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Commits on Oct 27, 2016

• [FEATURE] second part of staxid loading (only printing is missing)

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  e4a3077

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Commits on Oct 13, 2016

• [FEATURE] large commit finally bringing bidirectional FM

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Commits on Aug 16, 2016

• [INTERNAL] cleanup and deactivate AVX2-SIMD in auto-detection

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• [API] change index option format; validate in search mode

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Commits on Aug 15, 2016

• [API] change indexing format and remove seg support

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Commits on Aug 11, 2016

• [INTERFACE] change default options, improve diagnostics

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  committed
  6dc83ab

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Commits on Aug 10, 2016

• [FEATURE] further work on SIMD and full-dp

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  52d18ce

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Commits on Aug 8, 2016

• [FEATURE] preliminary SIMD-support for alignments

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Commits on Jul 27, 2016

• Merge branch 'master' into lambda-next

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