Fast and efficient conversion of Nanopore modBAM from guppy basecaller to BED files for differential methylation and machine learning predictions

CMSC737 - Assembly Model Testing

Analyzing the genomic and metagenomic features of SGB748 MAGs from oral samples to uncover their role in health and peri-implant diseases through patient metadata integration.

Framework for standardized bee genetics: JSON-LD metadata, ethical protocols, governance with FAIR/CARE principles. Privacy-by-design, automated compliance, tiered access. Supports reproducible genomics for conservation, agriculture, climate studies with data sovereignty.

A comparative genomic analysis carried out with genomic tool kits such as SAMtools , BCFtools , MAFFT as well as phylogeny softwares such as iTOL.

This project was conducted as part of the HIDS-7003-01 Final Project to explore molecular and immune-related changes in Bladder Cancer using genomic data.

Data associated with Ferrante et al. 2021 - Conservation Genetics

A modular genomic toolkit focused on automated primer design, sequence validation, and workflow orchestration. Built for reliability, reproducibility, and scalable bioinformatics workflows.