Tags: BiocPy/SpatialExperiment
Tags
Change to image handling for consistency (#51) - Add an affine function that computes a `rasterio.Affine` object given a `scale_factor`. This assumes a simple scaling where the origin is (0,0) in the spatial coordinate system corresponding to the top-left pixel (0,0). More complex alignments would require explicit affine transforms. - Ensure `img_raster()` consistently returns a PIL.Image.Image. - Add `to_numpy()` method. - Changes to how caching works in remote images.
Load visium as SPE (#16) * WIP: Implement read_10x_visium * WIP: Wait for combine ops on SpatialExperiment objs to be implemented * read_tenx_visium executes successfully * Initial test for read_tenx_visium passing * Restrict scipy version to be compatible with python>=3.9 * WIP: Working on last test case for read_tenx_visium * Fix test_tissue_positions_files test case * Update CHANGELOG * Handle paths and urls more reliably * Localize dependencies
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