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1. outerspace outerspace Public

   A python tool for extracting short sequences from NGS data with fuzzy regular expressions.

   Python 2 2

2. quantitative-reasoning-in-biology quantitative-reasoning-in-biology Public

   Jupyter Notebook 1

3. cigarmath cigarmath Public

   A collection of python utilities for manipulating CIGARS.

   Python

4. damlab-wrappers damlab-wrappers Public

   A collection of Snakemake wrappers and multiqc plugins targeted at Nanopore HIV sequence analysis.

   Python 1 1

5. hiv-transformers hiv-transformers Public

   A collection of Hugging Face tools for analyzing HIV

   Jupyter Notebook 2