Restrict pandas dependency to version <3.0#3186
Merged
MMathisLab merged 1 commit intoDeepLabCut:mainfrom Jan 22, 2026
Merged
Conversation
Pandas just released version 3.0, which is incompatible for our codebase. This Commit restricts the requirement to version <3.0. Some minor adjustments are required to allow this new pandas version later (to_hdf method currently fails for positional arg `key`, some hdf5 files become read-only causing issues).
MMathisLab
approved these changes
Jan 22, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Motivation
Pandas just released version 3.0, which is incompatible for our codebase. This causes installation issues and also causes our CI workflows to fail.
This PR restricts the requirement to version <3.0 as a quick fix.
Changes:
added upperbound for pandas <3.0 in setup.py and requirements.txt
Possible follow-up
Some minor adjustments are required later if we want to allow installation of this newer pandas version (to_hdf method currently fails for positional arg
key, some hdf5 files become read-only causing issues). Meanwhile we can work on migration to polars as replacement of pandas.