Update conda env yaml: bump DeepLabCut and remove nb_conda#3213
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MMathisLab merged 3 commits intomainfrom Mar 4, 2026
Merged
Update conda env yaml: bump DeepLabCut and remove nb_conda#3213MMathisLab merged 3 commits intomainfrom
MMathisLab merged 3 commits intomainfrom
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C-Achard
approved these changes
Feb 26, 2026
AlexEMG
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Mar 3, 2026
MMathisLab
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Mar 4, 2026
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Motivation:
The conda env yaml is largely outdated and needs some updating.
Changes:
nb_conda: it is an unmaintained Jupyter extension. This resolves DeepLabCut conda install fails due to pkg_resources deprecation #3203.deeplabcutversion (was rc9, now set to --pre so it always installs latest prerelease)notebook<7.0.0: This was in the YAML to support nb_conda.pytables==3.8.0: this should now be installed via pip instead of conda. Pinning to this version is actually harmful as it is largely outdated and may break pandas. tables is currently already installed via pip, so no need for the conda install.(The following PRs even make this more specific, by letting pandas handle tables dependency as extra Install through pyproject.toml (PEP 518/621) #3184 , Handle tables via pip as pandas extra instead of separate conda install (and update installation instructions) #3214)