Connectome Variability

Quantifying how functional connectivity estimates vary across 100 repetitions of the same fMRI preprocessing pipelines.

Datasets

Dataset source	Directory	Subjects	Atlas
OpenNeuro	`4subs/`	4 subjects from 4 different OpenNeuro datasets	Schaefer 400
OASIS	`oasis/`	172 subjects (paired AD/HC)	Schaefer 434

See hpc_environment.yml for the full environment specification.

Name		Name	Last commit message	Last commit date
Latest commit History 36 Commits
4subs		4subs
gp_analysis		gp_analysis
notebooks_reference_lea		notebooks_reference_lea
oasis		oasis
.gitignore		.gitignore
Icon		Icon
Icon.png		Icon.png
README.md		README.md
hpc_compute_rankings.sh		hpc_compute_rankings.sh
hpc_environment.yml		hpc_environment.yml
hpc_plot_hexbin.sh		hpc_plot_hexbin.sh
plot_iqr_ranking.ipynb		plot_iqr_ranking.ipynb
plot_r_exploratory.py		plot_r_exploratory.py
plot_rankings.py		plot_rankings.py
utils.py		utils.py