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1. Differential-Gene-Expression-Analysis-using-DESeq2 Differential-Gene-Expression-Analysis-using-DESeq2 Public

   This project provides a streamlined R script for performing Differential Gene Expression Analysis (DGEA) using the DESeq2 package. It is designed for RNA-seq raw count data (non-decimal integers) a…

   R

2. SOM_Clustering SOM_Clustering Public

   This repository contains a Python script that applies a Self-Organizing Map (SOM) to cluster significantly differentially expressed genes from RNA-seq or other high-throughput expression data.

3. ProteinFoldPro ProteinFoldPro Public

   ProteinFold Pro: A multi-method protein structure prediction pipeline combining ColabFold (AlphaFold2), ESMFold, and structure refinement tools. Ideal for researchers and bioinformaticians needing …

   Python

4. HYA28-toolkit HYA28-toolkit Public

   🧬 Browser-based bioinformatics toolkit sequence analysis, ORF finding & CSV visualization. No install needed

   HTML

5. NCBI-SeqExtract NCBI-SeqExtract Public

   Tired of downloading sequences one by one from NCBI? Give it a CSV, get a FASTA with optional flanking regions.

   Python

6. ORFEX ORFEX Public

   ORFEX - ORF Extraction & Annotation Pipeline | Automated pipeline for predicting open reading frames (ORFs) using Prodigal and annotating them via DIAMOND/BLASTP against protein databases. Outputs …

   Shell