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1. pinellolab/EPInformer pinellolab/EPInformer Public

   code to run EPInformer for gene expression prediction and gene-enhancer link prediction

   Jupyter Notebook 50 12

2. CRISPR-Net CRISPR-Net Public

   A Recurrent Convolutional Network Quantifies CRISPR Off-target Activities with Indels and Mismatches

   Python 7 3

3. deepMotifSyn deepMotifSyn Public

   A deep learning approach to synthesize heterodimeric DNA motifs

   Jupyter Notebook 2

4. varTFBridge varTFBridge Public

   Integrative framework combining TF footprinting with genome-wide association analyses to identify causal noncoding variants and elucidate their regulatory mechanisms in gene regulation

   Jupyter Notebook 3 1

5. CRISPRattention CRISPRattention Public

   An artificial intelligence approach for gene editing off-target quantification: convolution neural network designs and considerations

   Jupyter Notebook

6. pellinlab/ABSOLVE-seq pellinlab/ABSOLVE-seq Public

   Scalable assessment of genome editing off-target outcomes due to genetic variants

   R 2