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Commits on May 19, 2016

• squid:S1066 - Collapsible if statements should be merged (#469)

  

  Mohamed Ezzat

  authored and

  Yossi Farjoun

  committed
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Commits on Apr 17, 2016

• Fixed bug in CompareSams that occurs when two read mates have the same genomic start position. (#516)

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  Yossi Farjoun

  committed
  e54c655

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Commits on Jan 7, 2016

• Package-wide documentation improvements

  

  Geraldine Van der Auwera

  committed
  2c0370a

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Commits on Jun 26, 2015

• Adding a tool SimpleMarkDuplicatesWithMateCigar that uses the new HTSJDK

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  Nils Homer

  committed
  a4369ef

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Commits on Dec 10, 2014

• Code review changes.

  jacarey

  committed
  46330cb

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Commits on Dec 9, 2014

• Added SAM/BAM/CRAM converter tests. This relies on the jc_cram_changes branch of the htsjdk.

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  jacarey

  committed
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Commits on Oct 22, 2014

• This makes a fundamental change to how we run Picard. We now have a

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  nh13

  committed
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Commits on May 14, 2014

• Unit test for GatherBamFiles

  geoffjentry

  committed
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Commits on May 3, 2014

• Step 3: Optimizing imports

  

  Nils Homer

  committed
  705f349

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• Step 2: refactor files for the split and refactor to produce picard

  

  Nils Homer

  committed
  8b28332

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• Step 1: initial move of files for split and refactor to produce picard

  

  Nils Homer

  committed
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