Commits

History for

Commits on Apr 5, 2016

Added an option to require a minimum read length after applying adapter clipping to reads.
tfenne
committed

Commits on Feb 24, 2016

Merge pull request #444 from DevFactory/release/Classes-without-public-constructors-should-be-final-fix-1
akiezun
committed

Commits on Feb 17, 2016

staging/Collection.isEmpty()-should-be-used-to-test-for-emptiness-fix-1
Mohammed Ezzat
committed

Commits on Feb 16, 2016

squid:S2974 - Classes without public constructors should be final
Mohammed Ezzat
committed

Commits on Jan 19, 2016

Added read-end quality trimming to SamToFastq.
tfenne
committed

Commits on Jan 7, 2016

Package-wide documentation improvements
Geraldine Van der Auwera
committed

Commits on Dec 9, 2014

Added SAM/BAM/CRAM converter tests. This relies on the jc_cram_changes branch of the htsjdk.
jacarey
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Commits on Dec 4, 2014

Added read group tag option
rernst
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Commits on Oct 22, 2014

This makes a fundamental change to how we run Picard. We now have a
nh13
committed

Commits on Sep 10, 2014

Removed redundant IOUtil.openFileForWriting() calls for the fastq writers.
Tim Fennell
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Commits on Jun 5, 2014

Clarify what a "non-PF read" is.
marcelm
committed

Commits on May 3, 2014

Step 3: Optimizing imports
Nils Homer
committed
Step 2: refactor files for the split and refactor to produce picard
Nils Homer
committed
Step 1: initial move of files for split and refactor to produce picard
Nils Homer
committed

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