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@NaaVRE

NaaVRE

Notebook as a Virtual Research Environment

NaaVRE - Notebook as a Virtual Research Environment

NaaVRE is built by LifeWatch ERIC VLIC and the QCDIS team at the University of Amsterdam. To learn more, visit https://naavre.net.

Repositories overview

NaaVRE code base and documentation

The NaaVRE code base is distributed across several repositories.

Misc.

License

License information is included in each repository. New repositories should be licensed under the Apache License, Version 2.0.

Publications

  • Zhao, Z., Koulouzis, S., Bianchi, R., Farshidi, S., Shi, Z., Xin, R., Wang, Y., Li, N., Shi, Y., Timmermans, J., Kissling, W.D.: Notebook-as-a-VRE (NaaVRE): From private notebooks to a collaborative cloud virtual research environment. Softw Pract Exp. spe.3098 (2022). https://doi.org/10.1002/spe.3098.
  • Zhao, Z., Kissling, W.D., Hengeveld, G.M., Athanasiadis, I., Soetaert, K., Hof, A.: A Virtual Lab Maturity Model for Guiding the Co-Development of Advanced Virtual Research Environments. 2025 IEEE Int. Conf. Serv. Oriented Syst. Eng. (SOSE). pp. 20-26 (2025). https://doi.org/10.1109/SOSE67019.2025.00007.

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  1. NaaVRE-architecture NaaVRE-architecture Public

    Description of the NaaVRE architecture

    Makefile 1

  2. NaaVRE-dev-integration NaaVRE-dev-integration Public

    Components integration for development and testing (Tilt)

    Starlark

  3. NaaVRE-containerizer-jupyterlab NaaVRE-containerizer-jupyterlab Public

    Containerizer frontend (Jupyter Lab extension)

    TypeScript

  4. NaaVRE-containerizer-service NaaVRE-containerizer-service Public

    Containerizer service (FastAPI)

    Jupyter Notebook

  5. NaaVRE-workflow-jupyterlab NaaVRE-workflow-jupyterlab Public

    NaaVRE workflow experiment manager on Jupyter Lab

    TypeScript

  6. NaaVRE-workflow-service NaaVRE-workflow-service Public

    NaaVRE workflow service

    Python

Repositories

Showing 10 of 35 repositories

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