In this repository you will find the ORMIR templates for:

• Jupyter notebook
• readme.md file for a GitHub repository
• Folder and file structure for a computational project

These templates are meant to facilitate MSK imaging researchers in working in an open and reproducible way. Just as you download a manuscript template and complete it when writing a paper, here you can download these templates and adapt them to the needs of your code, data, and narratives.

• Click on the green button Code on the top right, and click Download Zip
• Unzip the folder and start working on the templates

• Click on the green button Code on the top right, then Clone or Open with GitHub Desktop.
• Make the changes
• Push the changes to the repository

If you use the material from this repository, please cite as follows:

Bonaretti, S., Cameron, D., Hernandez, M. E., & Iori, G. (2025). ORMIR templates (v1.0). Zenodo. https://doi.org/10.5281/zenodo.17206440

• Decide the repository license
• Create tests for notebooks (see Matt's blog post here)