awesome-sythetic-single-cell-data-papers

[2025 NM] scMultiSim: simulation of single-cell multi-omics and spatial data guided by gene regulatory networks and cell–cell interactions [paper]
[2024 Nature Biomedical Engineering] Synthetic multimodal data modelling for data imputation [paper]
[2023 NBT] scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics [paper]
[2023 NC] scReadSim: a single-cell RNA-seq and ATAC-seq read simulator [paper]
[2023 biorxiv] GRouNdGAN: GRN-guided simulation of single-cell RNA-seq data using causal generative adversarial networks [paper]
[2022 JCB] Simulating Single-Cell Gene Expression Count Data with Preserved Gene Correlations by scDesign2 [paper]
[2021 GB] scDesign2: a transparent simulator that generates high-fidelity single-cell gene expression count data with gene correlations captured [paper]
[2019 Bioinformatics] A statistical simulator scDesign for rational scRNA-seq experimental design [paper]

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