This repo hosts the source code and scripts for evaluating spatially variable gene detection methods for spatial transcriptomics data.

All scripts containing the pre-processing, functions to run all methods in the manuscript and plots are provided.

Google drive link to download the simulation data and accompanying raw gene expression matrices with spatial coordinates is provided here.

Carissa Chen⁺, Hani Jieun Kim^+,*, and Pengyi Yang* (2024) Evaluating spatially variable gene detection methods for spatial transcriptomics data, Genome Biology, 25, 18, FullText.