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Gel Image Tool

Desktop tool for processing gel electrophoresis images. Load a raw photo of a gel, auto-crop to the gel region, and choose between three output modes:

  • Green Channel - extracted and cropped
  • Green + Band Boost - background-subtracted with amplified band signal (adjustable gain)
  • Residual (Detrended) - column-detrended, horizontally smoothed residual for maximum band contrast

Install & Run

cd gel-image-tool
uv sync
uv run gel-tool

Reference

The processing pipeline was prototyped in reference/gel_conversion.ipynb.

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Desktop tool for processing gel electrophoresis images

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