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19 changes: 19 additions & 0 deletions cpp/benchmarks/abm.cpp
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/*
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele
*
* Contact: Martin J. Kuehn <[email protected]>
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
#include "abm/simulation.h"

#include "benchmark/benchmark.h"
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2 changes: 1 addition & 1 deletion cpp/benchmarks/flow_simulation_ode_secirvvs.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Rene Schmieding, Daniel Abele, Martin J. Kuehn
*
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2 changes: 1 addition & 1 deletion cpp/benchmarks/flow_simulation_ode_secirvvs.h
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Rene Schmieding, Daniel Abele, Martin J. Kuehn
*
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2 changes: 1 addition & 1 deletion cpp/benchmarks/flow_simulation_ode_seir.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Rene Schmieding, Daniel Abele, Martin J. Kuehn
*
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2 changes: 1 addition & 1 deletion cpp/benchmarks/graph_simulation.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Henrik Zunker
*
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2 changes: 1 addition & 1 deletion cpp/benchmarks/graph_simulation.h
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@@ -1,5 +1,5 @@
/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Henrik Zunker
*
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2 changes: 1 addition & 1 deletion cpp/benchmarks/integrator_step.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Rene Schmieding
*
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2 changes: 1 addition & 1 deletion cpp/benchmarks/integrator_step.h
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Rene Schmieding
*
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2 changes: 1 addition & 1 deletion cpp/benchmarks/secir_ageres_setups.h
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Rene Schmieding
*
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2 changes: 1 addition & 1 deletion cpp/benchmarks/simulation.cpp
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@@ -1,5 +1,5 @@
/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Rene Schmieding
*
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2 changes: 1 addition & 1 deletion cpp/benchmarks/simulation.h
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@@ -1,5 +1,5 @@
/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Rene Schmieding
*
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2 changes: 1 addition & 1 deletion cpp/examples/abm_history_object.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Khoa Nguyen
*
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2 changes: 1 addition & 1 deletion cpp/examples/abm_minimal.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Khoa Nguyen
*
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2 changes: 1 addition & 1 deletion cpp/examples/ad_odeint_example.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Ralf Hannemann-Tamas
*
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2 changes: 1 addition & 1 deletion cpp/examples/ad_square_example.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Ralf Hannemann-Tamas
*
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2 changes: 1 addition & 1 deletion cpp/examples/adapt_rk_test.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Martin J. Kuehn
*
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19 changes: 19 additions & 0 deletions cpp/examples/cli.cpp
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/*
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Rene Schmieding
*
* Contact: Martin J. Kuehn <[email protected]>
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
#include "memilio/io/cli.h"

#include <vector>
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2 changes: 1 addition & 1 deletion cpp/examples/data_dir.h.in
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele
*
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2 changes: 1 addition & 1 deletion cpp/examples/euler_test.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Martin J. Kuehn
*
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2 changes: 1 addition & 1 deletion cpp/examples/glct_secir.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Lena Ploetzke
*
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2 changes: 1 addition & 1 deletion cpp/examples/graph_stochastic_mobility.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele
*
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19 changes: 19 additions & 0 deletions cpp/examples/history.cpp
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/*
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Carlotta Gerstein
*
* Contact: Martin J. Kuehn <[email protected]>
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
#include "memilio/io/history.h"
#include <iostream>
#include <vector>
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2 changes: 1 addition & 1 deletion cpp/examples/ide_initialization.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Lena Ploetzke, Anna Wendler
*
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2 changes: 1 addition & 1 deletion cpp/examples/ide_secir.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Anna Wendler, Lena Ploetzke
*
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20 changes: 19 additions & 1 deletion cpp/examples/ide_secir_ageres.cpp
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/*
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Hannah Tritzschak, Anna Wendler
*
* Contact: Martin J. Kuehn <[email protected]>
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
#include "ide_secir/model.h"
#include "ide_secir/infection_state.h"
#include "ide_secir/simulation.h"
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2 changes: 1 addition & 1 deletion cpp/examples/ide_seir.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Lena Ploetzke
*
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2 changes: 1 addition & 1 deletion cpp/examples/lct_secir.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Lena Ploetzke
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_seair.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Ralf Hannemann-Tamas
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_seair_optimization.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Ralf Hannemann-Tamas
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_secir.cpp
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@@ -1,5 +1,5 @@
/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Martin J. Kuehn
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_secir_ageres.cpp
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@@ -1,5 +1,5 @@
/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Martin J. Kuehn
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_secir_contact_changes.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Martin J. Kuehn
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_secir_graph.cpp
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@@ -1,5 +1,5 @@
/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Henrik Zunker
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_secir_parameter_sampling.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Martin J. Kuehn
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_secir_parameter_study.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Martin J. Kuehn
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_secir_parameter_study_graph.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Henrik Zunker
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_secir_read_graph.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_secir_save_results.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Wadim Koslow
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_secirts.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Henrik Zunker
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_secirvvs.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Martin J. Kuehn
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_seir.cpp
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@@ -1,5 +1,5 @@
/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Martin J. Kuehn
*
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19 changes: 19 additions & 0 deletions cpp/examples/ode_seir_ageres.cpp
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/*
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Martin J. Kuehn
*
* Contact: Martin J. Kuehn <[email protected]>
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
#include "ode_seir/model.h"
#include "ode_seir/infection_state.h"
#include "ode_seir/parameters.h"
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2 changes: 1 addition & 1 deletion cpp/examples/ode_seir_flows.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Martin J. Kuehn, Rene Schmieding, Henrik Zunker
*
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2 changes: 1 addition & 1 deletion cpp/examples/ode_sir.cpp
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/*
* Copyright (C) 2020-2024 MEmilio
* Copyright (C) 2020-2025 MEmilio
*
* Authors: Daniel Abele, Jan Kleinert, Martin J. Kuehn
*
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