This repository is a companion to the project and preprint:

Scholz LA, Mancienne T, Stednitz SJ, Scott EK, Lee CCY (2025) Plug-and-Play automated behavioral tracking of zebrafish larvae with DeepLabCut and SLEAP: pre-trained networks and datasets of annotated poses. bioRxiv DOI: 10.1101/2025.06.04.657938

The four exported models result of our work are available for download directly from:

Scholz LA, Lee C, Stednitz S, Mancienne T, Scott E (2025) DLC and SLEAP pre-trained exported models. The University of Melbourne. Software. DOI: 10.26188/29275838

The exported models can be used within Bonsai for offline and real-time tracking withing Bonsai-rx. For DLC, see Bonsai-DLC and for SLEAP, see SLEAP documentation and Bonsai-SLEAP.

We also provide the annotated datasets used to train and compare the models, which can be downloaded from:

Scholz LA, Mancienne T, Stednitz S, Scott E, Lee CCY (2025) Datasets of zebrafish larvae poses - annotated frames and videos. Dataset. DOI: 10.26188/29276009.v1