edgeR is available as part of Bioconductor, see: https://bioconductor.org/packages/edgeR. Questions about limpa can be sent to the Bioconductor support forum at https://support.bioconductor.org.

This repository is used to host edgeR documentation. The following vignettes and example analyses using are available:

• Differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline
• edgeR User's Guide (pdf)
• Datasets used in the edgeR User's Guide
• edgeR Reference Manual (pdf)

References

Chen Y, Chen L, Lun ATL, Baldoni PL, Smyth GK (2025). edgeR v4: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets. Nucleic Acids Research 53(2), gkaf018. doi:10.1093/nar/gkaf018