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The Jackson Laboratory

The Jackson Laboratory: Leading the search for tomorrow's cures.

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  1. SVE SVE Public

    Python 51 11

  2. ezomero ezomero Public

    A module with convenience functions for writing Python code that interacts with OMERO.

    Python 46 17

  3. Picky Picky Public

    Structural Variants Pipeline for Long Reads

    Perl 44 6

  4. LIRICAL LIRICAL Public

    LIkelihood Ratio Interpretation of Clinical AbnormaLities

    Java 39 13

  5. zarrdataset zarrdataset Public

    A dataset for loading zarr files to be used in machine learning training pipelines

    Python 35 4

  6. JAXBD2K-ShortCourse JAXBD2K-ShortCourse Public

    This repository contains course materials from JAX-BD2K workshop.

    Shell 32 6

Repositories

Showing 10 of 386 repositories
  • voice-stream-io Public

    VoICE streaming service. Allows multiple input file formats to be streamed to POJOS in a very performant way.

    TheJacksonLaboratory/voice-stream-io’s past year of commit activity
    Java 0 Apache-2.0 0 1 1 Updated Mar 24, 2026
  • image-processing-ia Public Forked from datacarpentry/image-processing

    Image Processing with Python

    TheJacksonLaboratory/image-processing-ia’s past year of commit activity
    HTML 0 127 0 0 Updated Mar 24, 2026
  • STQ Public

    Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images

    TheJacksonLaboratory/STQ’s past year of commit activity
    Python 25 MIT 4 2 0 Updated Mar 23, 2026
  • nf-tenx Public

    All 10x Genomics processing pipelines rolled into one containerized pipelines

    TheJacksonLaboratory/nf-tenx’s past year of commit activity
    Groovy 7 MIT 1 4 1 Updated Mar 20, 2026
  • geneweaver-db Public

    The GeneWeaver database interaction code.

    TheJacksonLaboratory/geneweaver-db’s past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Mar 20, 2026
  • jds-ui-toolkit Public

    The JAX UI Toolkit workspace is a development environment engineered to streamline the creation, testing and deployment of shared UI components and packages across the JAX Data Science ecosystem.

    TheJacksonLaboratory/jds-ui-toolkit’s past year of commit activity
    TypeScript 0 MIT 0 1 0 Updated Mar 18, 2026
  • NBL1 Public

    This is a repository for code used in the manuscript titled "NBL1 Associates with Renal Phenotypes in Mice, but Partial Nbl1 Reduction Does Not Ameliorate Kidney Disease"

    TheJacksonLaboratory/NBL1’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 18, 2026
  • geneweaver-api Public

    A system for the integration and analysis of heterogeneous functional genomics data.

    TheJacksonLaboratory/geneweaver-api’s past year of commit activity
    Python 6 Apache-2.0 0 0 1 Updated Mar 12, 2026
  • jax-apml-lrs Public
    TheJacksonLaboratory/jax-apml-lrs’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Mar 10, 2026
  • pdxnet-image-analysis-aacr2022 Public

    Regional classification and other analysis of PDXNet H&E images for AACR 2022

    TheJacksonLaboratory/pdxnet-image-analysis-aacr2022’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 9, 2026
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