Repository for segmentation of a specimen scan. See this JSON file for specimen details.
- Species: Theobroma cacao
- Modality: Micro CT (or synchrotron)
- Contrast: Yes
- Dimensions: (627, 687, 957)
- Spacing (mm): (0.0205306, 0.0205306, 0.0205306)
flower volume masked with whole flower segmentation; view from side
flower volume masked with whole flower segmentation; view from apex
Original micro-CT data is available on MorphoSource.org @ ark:/87602/m4/500005. Surface model available on Sketchfab @ https://skfb.ly/puvvK. Landmarks for geometric morphometric analysis available on Zenodo @ https://doi.org/10.5281/zenodo.15107026. Full micro-CT scanning parameters available on Scholarship.Miami.Edu Thesis Portal @ Appendix S2-2.
- Wolcott et al. 2023. 3D pollination biology using micro‐computed tomography and geometric morphometrics in Theobroma cacao. Applications in Plant Sciences. DOI
- Wolcott et al. 2025. Morphology 3.0 - 3D Pollination Biology of Cacao and Its Relatives (Malvaceae: Byttnerioideae) using Micro-CT and Machine Learning. Doctoral Dissertation, University of Miami. Scholarship.Miami.Edu