Commits

Breadcrumbs

History for

ondocker

User selector

All users

All time

Commit History

Commits on Mar 16, 2021

• Append panaroo names and genes contained to isolate metadata and post to frontend

  Danderson123

  committed
  399e8e0

  Copy full SHA for 399e8e0

• Append standardised gene jsons to elasticsearch index without writing

  Danderson123

  committed
  9fcb94b

  Copy full SHA for 9fcb94b

Commits on Mar 15, 2021

• Reformat allGene json to single layer for elasticsearch indexing

  Danderson123

  committed
  216fc54

  Copy full SHA for 216fc54

• Search COBS index for panaroo-standardised annotation

  Danderson123

  committed
  0567b82

  Copy full SHA for 0567b82

Commits on Mar 12, 2021

• Construct COBS index from a panaroo graph

  Danderson123

  committed
  d28fc2a

  Copy full SHA for d28fc2a

• Extract panaroo-updated annotations and post to frontend

  Danderson123

  committed
  7b04dda

  Copy full SHA for 7b04dda

• Reformat annotation files and run panaroo

  Danderson123

  committed
  6ef6c19

  Copy full SHA for 6ef6c19

Commits on Mar 11, 2021

• Post sequence URLs to frontend for download

  Danderson123

  committed
  898c0bb

  Copy full SHA for 898c0bb

Commits on Mar 10, 2021

• Use latest COBS to query assemblies

  Danderson123

  committed
  9a5f8c9

  Copy full SHA for 9a5f8c9

Commits on Mar 9, 2021

• Search PubMed for paper query using Entrez

  Danderson123

  committed
  5e90b08

  Copy full SHA for 5e90b08

Commits on Mar 8, 2021

• Query uploaded assembly in assembly index

  Danderson123

  committed
  221536e

  Copy full SHA for 221536e

• Extract prodigal-predicted genes from assembled reads for indexing

  Danderson123

  committed
  d9a52ac

  Copy full SHA for d9a52ac

Commits on Mar 5, 2021

• Index ena read metadata in locally hosted elasticsearch index

  Danderson123

  committed
  ccdbe4e

  Copy full SHA for ccdbe4e

• Download ENA reads and metadata

  Danderson123

  committed
  d2bd353

  Copy full SHA for d2bd353

Commits on Mar 4, 2021

• Retrieve raw reads with SRA toolkit and read metadata using entrez

  Danderson123

  committed
  4f8da10

  Copy full SHA for 4f8da10

Commits on Mar 1, 2021

• Initial attempt to identify species

  Danderson123

  committed
  b5062ff

  Copy full SHA for b5062ff

• Use assembly stats package to calculate sequence length stats

  Danderson123

  committed
  0ae57c9

  Copy full SHA for 0ae57c9

Commits on Feb 26, 2021

• Build COBS index of assemblies

  Danderson123

  committed
  94d917e

  Copy full SHA for 94d917e

Commits on Feb 25, 2021

• Rename repo

  Danderson123

  committed
  ec78bce

  Copy full SHA for ec78bce

Loading