| Name | Version | Category | Status |
|---|---|---|---|
| qualimap | 2.2.2a | QC | |
| fastq-screen | 0.15.2 | QC | |
| fastqc | 0.11.5 | QC | |
| fastp | 0.23.2 | QC | |
| ngscheckmate | 1.0.0 | QC | |
| sentieon-genomics | 202112.04 | PGX-DNA-SNV | |
| strelka | 2.9.10 | PGX-DNA-SNV | |
| pindel | 0.2.5b9 | PGx-DNA-Indel | |
| fastp | 0.23.2 | RNA-EXP | |
| hisat2 | 2.2.1 | RNA-EXP | |
| samtools | 1.14 | RNA-EXP | |
| stringtie | 1.3.4 | RNA-EXP | |
| ballgown | RNA-EXP | ||
| star | 2.7.10a | RNA-Fusion | |
| star-fusion | 1.6.0 | RNA-Fusion | |
| arriba | 2.3.0 | RNA-Fusion | |
| starseqr | 0.6.7 | RNA-Fusion | |
| mixcr | 2.1.3 | RNA-TCR | |
| bwa | 0.7.17 | GATK-DNA-SNV | |
| gatk | 4.0.5.1 | GATK-DNA-SNV | |
| hap.py | 0.3.14 | GATK-DNA-SNV | |
| picard | 2.18.7 | GATK-DNA-SNV | |
| cnvkit | 0.96 | DNA-CNV | |
| ascat | 2.5.2 | DNA-CNV | |
| cnv_facets | 0.16.0 | DNA-CNV | |
| r-sequenza | 2.1.2 | DNA-CNV | |
| delly | 1.0.3 | DNA-SV | |
| manta | 1.6.0 | DNA-SV | |
| gridss | 2.13.2 | DNA-SV | |
| svaba | 1.1.0 | DNA-SV | |
| hla-polysolver | 1.0.0 | HLA-Typing DNA | |
| minimap2 | 2.24 | ecDNA |
biominer-lab/omics-workflow-images
Folders and files
| Name | Name | Last commit date | ||
|---|---|---|---|---|