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@cellannotation

Cell Annotation Platform

Tooling for the Cell Annotation Platform

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  1. cap-data-schema cap-data-schema Public

    Data schema of the AnnData (*.h5ad) file for ingestion to the Cell-Annotation-Platform (CAP)

    1

  2. cap-anndata cap-anndata Public

    Partial I/O functionality for AnnData (.h5ad) Files

    Python 7

  3. capseuratconverter capseuratconverter Public

    The dedicated repo for h5ad to Seurat-rds files convertion

    R 4 1

  4. cap-python-client cap-python-client Public

    Python client for CAP GraphQL API

    Python 1

  5. cap-validator cap-validator Public

    Python tool for validating H5AD AnnData files before uploading to the Cell Annotation Platform.

    Python 1

  6. cap-gene-filtering cap-gene-filtering Public

    Genes which are often over-expressed but biologically non-informative, filtered out on CAP by default

    Jupyter Notebook 1

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