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add custom easyblock for VEP#1512

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bartoldeman merged 2 commits intoeasybuilders:developfrom
boegel:VEP
Sep 18, 2018
Merged

add custom easyblock for VEP#1512
bartoldeman merged 2 commits intoeasybuilders:developfrom
boegel:VEP

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@boegel boegel commented Sep 17, 2018

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This installation command is very rigid and non- customizable. Could it listen to installopts or some other configurable parameters?

Otherwise lgtm

# --NO_UPDATE: don't update VEP during installation
# --DESTDIR: location to install Perl API modules into
cmd = "perl INSTALL.pl --NO_HTSLIB --AUTO af --SPECIES all --NO_UPDATE --DESTDIR %s " % api_mods_dir
run_cmd(cmd, log_all=True, simple=True, log_ok=True)
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This installation command is very rigid and non- customizable. Could it listen to installopts or some other configurable parameters?

@bartoldeman bartoldeman merged commit 4a1bbe5 into easybuilders:develop Sep 18, 2018
@boegel boegel deleted the VEP branch September 18, 2018 12:43
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2 participants