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update SAMtools easyblock to support installation of SAMtools 1.14#2620

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boegel merged 2 commits intoeasybuilders:developfrom
sassy-crick:20211115173642_new_pr_samtools
Nov 24, 2021
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update SAMtools easyblock to support installation of SAMtools 1.14#2620
boegel merged 2 commits intoeasybuilders:developfrom
sassy-crick:20211115173642_new_pr_samtools

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(created using eb --new-pr)

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The latest SAMtools 1.14 has removed some old files from the build as explained here
This updated EasyBlock addresses these changes.
I tested it as low as SAMtools-1.10-GCC-9.3.0.eb and that seems to have worked, after putting self.lib_files [] in the right line.

@sassy-crick sassy-crick changed the title Updated to reflect changes in 1.14 Updated to reflect changes in SAMTools 1.14 Nov 15, 2021
@boegel boegel added the update label Nov 24, 2021
@boegel boegel added this to the 4.x milestone Nov 24, 2021
@boegel boegel changed the title Updated to reflect changes in SAMTools 1.14 update SAMtools easyblock to support installationg of SAMtools 1.14 Nov 24, 2021
@boegel boegel changed the title update SAMtools easyblock to support installationg of SAMtools 1.14 update SAMtools easyblock to support installation of SAMtools 1.14 Nov 24, 2021
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boegel commented Nov 24, 2021

Test report by @boegel

Overview of tested easyconfigs (in order)

  • SUCCESS SAMtools-1.10-GCC-9.3.0.eb
  • SUCCESS SAMtools-1.11-GCC-10.2.0.eb
  • SUCCESS SAMtools-1.11-GCC-9.3.0.eb
  • SUCCESS SAMtools-1.12-GCC-10.3.0.eb
  • SUCCESS SAMtools-1.12-GCC-9.3.0.eb
  • SUCCESS SAMtools-1.13-GCC-10.3.0.eb

Build succeeded for 6 out of 6 (6 easyconfigs in total)
node3501.doduo.os - Linux RHEL 8.2, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/db472722b2ccd1934b002389de4868c5 for a full test report.

@boegel boegel modified the milestones: 4.x, next release (4.5.1?) Nov 24, 2021
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lgtm

@boegel boegel merged commit 58c568f into easybuilders:develop Nov 24, 2021
@sassy-crick sassy-crick deleted the 20211115173642_new_pr_samtools branch November 25, 2021 11:50
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