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fix support for imkl for numexpr 2.8.0+ in numexpr easyblock#2678

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akesandgren merged 1 commit intoeasybuilders:developfrom
SebastianAchilles:20220213112417_new_pr_numexpr
Feb 14, 2022
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fix support for imkl for numexpr 2.8.0+ in numexpr easyblock#2678
akesandgren merged 1 commit intoeasybuilders:developfrom
SebastianAchilles:20220213112417_new_pr_numexpr

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@SebastianAchilles SebastianAchilles commented Feb 13, 2022

(created using eb --new-pr)

site.cfg was updated to use the libraries tag instead of mkl_libs, which is recommended for newer version of NumPy.

CC: @jhgoebbert

@SebastianAchilles SebastianAchilles added this to the 4.x milestone Feb 13, 2022
@SebastianAchilles SebastianAchilles mentioned this pull request Feb 13, 2022
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@SebastianAchilles SebastianAchilles changed the title fix support for recent imkl version in numexpr easyblock fix support for imkl for numexpr 2.8.0+ in numexpr easyblock Feb 13, 2022
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SebastianAchilles commented Feb 13, 2022

Test report by @SebastianAchilles

Overview of tested easyconfigs (in order)

  • SUCCESS numexpr-2.7.1-foss-2019b-Python-3.7.4.eb
  • SUCCESS numexpr-2.7.1-foss-2020a-Python-3.8.2.eb
  • SUCCESS numexpr-2.7.1-fosscuda-2019b-Python-3.7.4.eb
  • SUCCESS numexpr-2.7.1-intel-2019b-Python-2.7.16.eb
  • SUCCESS numexpr-2.7.1-intel-2020a-Python-3.8.2.eb
  • SUCCESS SciPy-bundle-2020.11-foss-2020b.eb
  • SUCCESS SciPy-bundle-2020.11-foss-2020b-Python-2.7.18.eb
  • SUCCESS SciPy-bundle-2020.11-fosscuda-2020b.eb
  • SUCCESS SciPy-bundle-2020.11-intel-2020b.eb
  • SUCCESS SciPy-bundle-2020.11-intelcuda-2020b.eb
  • SUCCESS SciPy-bundle-2021.05-foss-2021a.eb
  • SUCCESS SciPy-bundle-2021.05-intel-2021a.eb
  • FAIL (build issue) SciPy-bundle-2021.10-foss-2021b.eb (partial log available at https://gist.github.com/aaae7ad072b2b3ec005dcb2ac16de4de)
  • FAIL (build issue) SciPy-bundle-2021.10-foss-2021b-Python-2.7.18.eb (partial log available at https://gist.github.com/19615dd0d52d1812696bea422249192c)
  • SUCCESS SciPy-bundle-2021.10-intel-2021b.eb

Build succeeded for 13 out of 15 (15 easyconfigs in total)
cnx3 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/12fab62f0a69ba42ea49cdc64f959afc for a full test report.

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SebastianAchilles commented Feb 14, 2022

Error in SciPy-bundle-2021.10-foss-2021b.eb and SciPy-bundle-2021.10-foss-2021b-Python-2.7.18.eb is

test_lobpcg.py::test_hermitian Fatal Python error: Segmentation fault

which was already observed in easybuilders/easybuild-easyconfigs#13789 (comment)

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SebastianAchilles commented Feb 14, 2022

Error in SciPy-bundle-2021.10-foss-2021b.eb and SciPy-bundle-2021.10-foss-2021b-Python-2.7.18.eb is

test_lobpcg.py::test_hermitian Fatal Python error: Segmentation fault

which was already observed in easybuilders/easybuild-easyconfigs#13789 (comment)

This error was already fixed in easybuilders/easybuild-easyconfigs#14178 However I did not yet rebuild OpenBLAS.

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akesandgren approved these changes Feb 14, 2022
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LGTM

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akesandgren commented Feb 14, 2022

Test report by @akesandgren

Overview of tested easyconfigs (in order)

  • SUCCESS SciPy-bundle-2021.10-foss-2021b.eb
  • SUCCESS SciPy-bundle-2021.10-foss-2021b-Python-2.7.18.eb

Build succeeded for 2 out of 2 (2 easyconfigs in total)
b-an02.hpc2n.umu.se - Linux Ubuntu 20.04, x86_64, Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, Python 3.8.10
See https://gist.github.com/dc4ea1db617b195e0f574a4d55469406 for a full test report.

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akesandgren commented Feb 14, 2022

Going in, thanks @SebastianAchilles!

@akesandgren akesandgren merged commit 061897e into easybuilders:develop Feb 14, 2022
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SebastianAchilles commented Feb 14, 2022

Test report by @SebastianAchilles

Overview of tested easyconfigs (in order)

  • SUCCESS SciPy-bundle-2021.10-foss-2021b.eb
  • SUCCESS SciPy-bundle-2021.10-foss-2021b-Python-2.7.18.eb
  • SUCCESS SciPy-bundle-2021.10-intel-2021b.eb

Build succeeded for 3 out of 3 (3 easyconfigs in total)
cnx3 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/58bb9e9cd696fd7c395738db43740087 for a full test report.

@boegel boegel added the update label Feb 16, 2022
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