use `sanity_check_load_module` in sanity check step of custom easyblock for pybind11 by boegel · Pull Request #3864 · easybuilders/easybuild-easyblocks

boegel · 2025-08-01T11:42:49Z

(created using eb --new-pr)

fixes easybuilders/easybuild-easyconfigs#23543

… for pybind11

boegel · 2025-08-01T11:45:52Z

@boegelbot please test @ jsc-zen3
EB_ARGS="pybind11-2.13.6-GCC-14.2.0.eb --sanity-check-only"

boegelbot · 2025-08-01T11:53:09Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=3864 EB_ARGS="pybind11-2.13.6-GCC-14.2.0.eb --sanity-check-only" EB_REPO=easybuild-easyblocks EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_3864 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 7454

Test results coming soon (I hope)...

Details

- notification for comment with ID 3144294650 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-08-01T11:53:29Z

Test report by @boegelbot

Overview of tested easyconfigs (in order)

SUCCESS pybind11-2.13.6-GCC-14.2.0.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/59154f2f9aa4ae19f61cf5bb4f23b9b7 for a full test report.

branfosj · 2025-08-01T11:54:09Z

Test report by @branfosj

Overview of tested easyconfigs (in order)

SUCCESS pybind11-2.13.6-GCC-14.2.0.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/c47c83f615f3e0248911538214c41e55 for a full test report.

branfosj · 2025-08-01T12:02:33Z

Test report by @branfosj

Overview of tested easyconfigs (in order)

FAIL (build issue) pybind11-2.13.6-GCC-14.2.0.eb (partial log available at https://gist.github.com/branfosj/7987200548c2b7c813ac0f1e50dff384)

Build succeeded for 0 out of 1 (1 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/b799b785e54bbaae55307334410ca883 for a full test report.

branfosj · 2025-08-01T12:03:42Z

Full build is failing (eb --include-easyblocks-from-pr 3864 pybind11-2.13.6-GCC-14.2.0.eb --rebuild -u):

== 2025-08-01 13:02:30,627 build_log.py:226 ERROR EasyBuild encountered an error (at easybuild/src/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): pybind11/2.13.6-GCC-14.2.0 module is not loaded, this should never happen... (at easybuild/easyblocks/generic/pythonpackage.py:1066 in sanity_check_step)

The same failure is seen with eb --include-easyblocks-from-pr 3864 pybind11-2.13.6-GCC-14.2.0.eb --module-only (assuming you already have pybind11 built).

branfosj · 2025-08-01T13:12:53Z

@boegelbot please test @ jsc-zen3
EB_ARGS="pybind11-2.13.6-GCC-14.2.0.eb --module-only"

boegelbot · 2025-08-01T13:13:09Z

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=3864 EB_ARGS="pybind11-2.13.6-GCC-14.2.0.eb --module-only" EB_REPO=easybuild-easyblocks EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_3864 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 7456

Test results coming soon (I hope)...

Details

- notification for comment with ID 3144552092 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-08-01T13:13:55Z

Test report by @boegelbot

Overview of tested easyconfigs (in order)

FAIL (build issue) pybind11-2.13.6-GCC-14.2.0.eb (partial log available at https://gist.github.com/boegelbot/4044141c6f0aefa80035f78c2b86115d)

Build succeeded for 0 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/66e033485e0cc0f662e1bcdc7e07ce81 for a full test report.

…1 easyblock

boegel · 2025-08-08T10:51:29Z

Full build is failing (eb --include-easyblocks-from-pr 3864 pybind11-2.13.6-GCC-14.2.0.eb --rebuild -u):
== 2025-08-01 13:02:30,627 build_log.py:226 ERROR EasyBuild encountered an error (at easybuild/src/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): pybind11/2.13.6-GCC-14.2.0 module is not loaded, this should never happen... (at easybuild/easyblocks/generic/pythonpackage.py:1066 in sanity_check_step)
The same failure is seen with eb --include-easyblocks-from-pr 3864 pybind11-2.13.6-GCC-14.2.0.eb --module-only (assuming you already have pybind11 built).

That problem is fixed with the change in e91d8ec

boegel · 2025-08-08T10:51:41Z

@boegelbot please test @ jsc-zen3
EB_ARGS="pybind11-2.13.6-GCC-14.2.0.eb"
CORE_CNT=16

boegelbot · 2025-08-08T10:53:09Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=3864 EB_ARGS="pybind11-2.13.6-GCC-14.2.0.eb" EB_REPO=easybuild-easyblocks EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_3864 --ntasks="16" ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 7524

Test results coming soon (I hope)...

Details

- notification for comment with ID 3167461373 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegel · 2025-08-08T10:53:16Z

Test report by @boegel

Overview of tested easyconfigs (in order)

SUCCESS pybind11-2.13.6-GCC-14.2.0.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
node4205.shinx.os - Linux RHEL 9.4, x86_64, AMD EPYC 9654 96-Core Processor (zen4), Python 3.9.18
See https://gist.github.com/boegel/29de61440156fabe0b723521525708e1 for a full test report.

edit: with --module-only

boegel · 2025-08-08T10:53:59Z

Test report by @boegel

Overview of tested easyconfigs (in order)

SUCCESS pybind11-2.13.6-GCC-14.2.0.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
node4205.shinx.os - Linux RHEL 9.4, x86_64, AMD EPYC 9654 96-Core Processor (zen4), Python 3.9.18
See https://gist.github.com/boegel/d3bf1fbb3994bdb2414835822a9f1c24 for a full test report.

edit: with --sanity-check-only

boegel · 2025-08-08T10:58:21Z

Test report by @boegel

Overview of tested easyconfigs (in order)

SUCCESS pybind11-2.13.6-GCC-14.2.0.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
node4205.shinx.os - Linux RHEL 9.4, x86_64, AMD EPYC 9654 96-Core Processor (zen4), Python 3.9.18
See https://gist.github.com/boegel/deb2fdce6678b688e928ec4a1d2b8a6c for a full test report.

boegelbot · 2025-08-08T10:58:45Z

Test report by @boegelbot

Overview of tested easyconfigs (in order)

SUCCESS pybind11-2.13.6-GCC-14.2.0.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c3.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/1c93b25f30c3b5cba6ec84d26be00c9c for a full test report.

boegel · 2025-08-09T16:14:42Z

@boegelbot please test @ jsc-zen3
EB_ARGS="pybind11-2.13.6-GCC-14.2.0.eb --sanity-check-only"

boegelbot · 2025-08-09T16:33:10Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=3864 EB_ARGS="pybind11-2.13.6-GCC-14.2.0.eb --sanity-check-only" EB_REPO=easybuild-easyblocks EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_3864 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 7536

Test results coming soon (I hope)...

Details

- notification for comment with ID 3171890935 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-08-09T16:33:35Z

Test report by @boegelbot

Overview of tested easyconfigs (in order)

SUCCESS pybind11-2.13.6-GCC-14.2.0.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/a8fa7f83574de0958910894cdcc484cf for a full test report.

branfosj · 2025-08-09T19:09:14Z

@boegelbot please test @ jsc-zen3
EB_ARGS="pybind11-2.13.6-GCC-14.2.0.eb --module-only"

boegelbot · 2025-08-09T19:13:09Z

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=3864 EB_ARGS="pybind11-2.13.6-GCC-14.2.0.eb --module-only" EB_REPO=easybuild-easyblocks EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_3864 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 7537

Test results coming soon (I hope)...

Details

- notification for comment with ID 3172044606 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-08-09T19:14:27Z

Test report by @boegelbot

Overview of tested easyconfigs (in order)

SUCCESS pybind11-2.13.6-GCC-14.2.0.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/879650f41cb58a1fa557587291dd1e10 for a full test report.

branfosj · 2025-08-10T17:55:25Z

Test report by @branfosj

Overview of tested easyconfigs (in order)

SUCCESS pybind11-2.13.5-GCC-14.2.0.eb
SUCCESS pybind11-2.13.6-GCC-14.2.0.eb

Build succeeded for 2 out of 2 (2 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/be4416ebed5db06b7c7bf92074dbdd77 for a full test report.

branfosj · 2025-08-10T17:55:42Z

For reference, my tests used pybind11-2.13.5-GCC-14.2.0.eb - pybind11 as an extension:

easyblock = 'PythonBundle'

name = 'pybind11'
version = '2.13.5'

homepage = 'https://pybind11.readthedocs.io'
description = """pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa,
 mainly to create Python bindings of existing C++ code."""

toolchain = {'name': 'GCC', 'version': '14.2.0'}

builddependencies = [
    ('CMake', '3.31.3'),
    # Test dependencies
    ('Eigen', '3.4.0'),
    ('Catch2', '2.13.10'),
    ('Python-bundle-PyPI', '2025.04'),  # to provide pytest
]

dependencies = [
    ('Boost', '1.88.0'),
    ('Python', '3.13.1'),
]

exts_list = [
    (name, version, {
        'source_urls': ['https://github.com/pybind/pybind11/archive/'],
        'sources': ['v%(version)s.tar.gz'],
        'patches': ['pybind11-2.10.3_require-catch.patch'],
    }),
]

moduleclass = 'lib'

branfosj · 2025-08-10T17:56:52Z

Test report by @branfosj

Overview of tested easyconfigs (in order)

SUCCESS pybind11-2.13.5-GCC-14.2.0.eb
SUCCESS pybind11-2.13.6-GCC-14.2.0.eb

Build succeeded for 2 out of 2 (2 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/18978f682f36295aa0358eefa4afac2c for a full test report.

branfosj · 2025-08-10T17:58:39Z

Test report by @branfosj

Overview of tested easyconfigs (in order)

SUCCESS pybind11-2.13.5-GCC-14.2.0.eb
SUCCESS pybind11-2.13.6-GCC-14.2.0.eb

Build succeeded for 2 out of 2 (2 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/17d2c8d47b822d51225199a12dd71b44 for a full test report.

branfosj

Tested with:

pybind11 in a single PythonPackage easyconfig
pybind11 as an extension in a PythonBundle easyconfig

and:

build
--module-only
--sanity-check-only

branfosj · 2025-08-10T18:01:33Z

Going in, thanks @boegel!

use sanity_check_load_module in sanity check step of custom easyblock…

1a1dc10

… for pybind11

boegel mentioned this pull request Aug 1, 2025

pybind11-2.13.6-GCC-14.2.0 sanity check command failed easybuilders/easybuild-easyconfigs#23543

Closed

boegel added the bug fix label Aug 1, 2025

boegel added this to the release after 5.1.1 milestone Aug 1, 2025

boegel changed the title ~~use sanity_check_load_module in sanity check step of custom easyblock for pybind11~~ use sanity_check_load_module in sanity check step of custom easyblock for pybind11 Aug 1, 2025

clean up fake module after calling parent sanity check step in pybin1…

e91d8ec

…1 easyblock

branfosj reviewed Aug 8, 2025

View reviewed changes

Comment thread easybuild/easyblocks/p/pybind11.py

fix return in custom sanity check for pybind11

8717560

branfosj approved these changes Aug 10, 2025

View reviewed changes

branfosj merged commit 760d101 into easybuilders:develop Aug 10, 2025
17 checks passed

boegel deleted the 20250801134246_new_pr_pythonpackage branch August 12, 2025 16:29

Conversation

boegel commented Aug 1, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

boegel commented Aug 1, 2025

Uh oh!

boegelbot commented Aug 1, 2025

Uh oh!

boegelbot commented Aug 1, 2025

Overview of tested easyconfigs (in order)

Uh oh!

branfosj commented Aug 1, 2025

Overview of tested easyconfigs (in order)

Uh oh!

branfosj commented Aug 1, 2025

Overview of tested easyconfigs (in order)

Uh oh!

branfosj commented Aug 1, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

branfosj commented Aug 1, 2025

Uh oh!

boegelbot commented Aug 1, 2025

Uh oh!

boegelbot commented Aug 1, 2025

Overview of tested easyconfigs (in order)

Uh oh!

boegel commented Aug 8, 2025

Uh oh!

boegel commented Aug 8, 2025

Uh oh!

boegelbot commented Aug 8, 2025

Uh oh!

boegel commented Aug 8, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Overview of tested easyconfigs (in order)

Uh oh!

boegel commented Aug 8, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Overview of tested easyconfigs (in order)

Uh oh!

Uh oh!

boegel commented Aug 8, 2025

Overview of tested easyconfigs (in order)

Uh oh!

boegelbot commented Aug 8, 2025

Overview of tested easyconfigs (in order)

Uh oh!

boegel commented Aug 9, 2025

Uh oh!

boegelbot commented Aug 9, 2025

Uh oh!

boegelbot commented Aug 9, 2025

Overview of tested easyconfigs (in order)

Uh oh!

branfosj commented Aug 9, 2025

Uh oh!

boegelbot commented Aug 9, 2025

Uh oh!

boegelbot commented Aug 9, 2025

Overview of tested easyconfigs (in order)

Uh oh!

branfosj commented Aug 10, 2025

Overview of tested easyconfigs (in order)

Uh oh!

branfosj commented Aug 10, 2025

Uh oh!

branfosj commented Aug 10, 2025

Overview of tested easyconfigs (in order)

Uh oh!

branfosj commented Aug 10, 2025

Overview of tested easyconfigs (in order)

Uh oh!

branfosj left a comment • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Choose a reason for hiding this comment

Uh oh!

branfosj commented Aug 10, 2025

Uh oh!

Uh oh!

boegel commented Aug 1, 2025 •

edited

Loading

branfosj commented Aug 1, 2025 •

edited

Loading

boegel commented Aug 8, 2025 •

edited

Loading

boegel commented Aug 8, 2025 •

edited

Loading

branfosj left a comment •

edited

Loading