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use clean_dir instead of remove_dir on installation directory in generic Binary easyblock#3927

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boegel merged 1 commit intoeasybuilders:developfrom
smoors:20250915153624_new_pr_binary
Apr 8, 2026
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use clean_dir instead of remove_dir on installation directory in generic Binary easyblock#3927
boegel merged 1 commit intoeasybuilders:developfrom
smoors:20250915153624_new_pr_binary

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@smoors smoors commented Sep 15, 2025 •
edited by boegel
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smoors commented Sep 17, 2025

Test report by @smoors

Overview of tested easyconfigs (in order)

  • SUCCESS configurable-http-proxy-4.6.3-GCCcore-13.3.0.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
node600.hydra.os - Linux Rocky Linux 9.6, x86_64, AMD EPYC 9384X 32-Core Processor (zen4), Python 3.9.21
See https://gist.github.com/smoors/705c8454d95d5f9a834b31964a387cda for a full test report.

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smoors commented Sep 17, 2025

Test report by @smoors

Overview of tested easyconfigs (in order)

  • SUCCESS Kraken2-2.1.4-gompi-2024a.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
node600.hydra.os - Linux Rocky Linux 9.6, x86_64, AMD EPYC 9384X 32-Core Processor (zen4), Python 3.9.21
See https://gist.github.com/smoors/3e859c5b7a48c5b9fdcd76800e81a9db for a full test report.

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smoors commented Sep 17, 2025

Test report by @smoors

Overview of tested easyconfigs (in order)

  • SUCCESS mgltools-1.5.7.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
node600.hydra.os - Linux Rocky Linux 9.6, x86_64, AMD EPYC 9384X 32-Core Processor (zen4), Python 3.9.21
See https://gist.github.com/smoors/a0ec4b4ab723ddf9800ee3cd80670a7a for a full test report.

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smoors commented Oct 31, 2025

@boegelbot please test @ jsc-zen3
EB_ARGS="QIIME2-2022.8.eb ant-1.10.15-Java-17.eb code-server-4.104.3.eb configurable-http-proxy-4.6.3-GCCcore-13.3.0.eb Gradle-8.14.2-Java-17.eb --installpath=/tmp/$USER/ebpr-3927"

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boegelbot commented Oct 31, 2025

@smoors: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=3927 EB_ARGS="QIIME2-2022.8.eb ant-1.10.15-Java-17.eb code-server-4.104.3.eb configurable-http-proxy-4.6.3-GCCcore-13.3.0.eb Gradle-8.14.2-Java-17.eb --installpath=/tmp/$USER/ebpr-3927" EB_CONTAINER= EB_REPO=easybuild-easyblocks EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_3927 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 8611

Test results coming soon (I hope)...

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- notification for comment with ID 3473594997 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Oct 31, 2025

Test report by @boegelbot

Overview of tested easyconfigs (in order)

Build succeeded for 4 out of 6 (5 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/b3c890aaf41147157a22430098efa710 for a full test report.

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smoors commented Oct 31, 2025

@boegelbot please test @ jsc-zen3
EB_ARGS="QIIME2-2022.8.eb --installpath=/tmp/$USER/ebpr-3927"

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boegelbot commented Oct 31, 2025

@smoors: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=3927 EB_ARGS="QIIME2-2022.8.eb --installpath=/tmp/$USER/ebpr-3927" EB_CONTAINER= EB_REPO=easybuild-easyblocks EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_3927 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 8621

Test results coming soon (I hope)...

Details

- notification for comment with ID 3473691841 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Oct 31, 2025 •
edited by smoors
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Test report by @boegelbot

Overview of tested easyconfigs (in order)

Build succeeded for 0 out of 2 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/b32bfa286f223f726038df715ea91e3e for a full test report.

EDIT

download of https://repo.anaconda.com/miniconda/Miniconda3-py38_4.12.0-Linux-x86_64.sh failed, is this blocked on jsc-zen3?

@smoors smoors mentioned this pull request Feb 20, 2026
Merged
@boegel boegel changed the title use clean_dir instead of remove_dir on installation directory for Binary easyblock use clean_dir instead of remove_dir on installation directory for Binary easyblock Mar 19, 2026
@boegel boegel added this to the next release (5.2.2?) milestone Mar 19, 2026
@boegel boegel changed the title use clean_dir instead of remove_dir on installation directory for Binary easyblock use clean_dir instead of remove_dir on installation directory in generic Binary easyblock Mar 19, 2026
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boegel commented Apr 8, 2026

Test report by @boegel

Overview of tested easyconfigs (in order)

  • SUCCESS Java-21.0.8.eb

  • SUCCESS MCR-R2024b.eb

  • SUCCESS Stata-18.eb

  • SUCCESS Nextflow-25.10.2.eb

  • SUCCESS Maven-3.9.11-Java-21.eb

  • SUCCESS nvidia-compilers-25.9.eb

  • SUCCESS CUDA-13.2.0.eb

  • SUCCESS CUDA-12.3.0.eb

  • SUCCESS ORCA-6.1.1-gompi-2023b-avx2.eb

  • SUCCESS pfind-20250510-gompi-2024a.eb

Build succeeded for 10 out of 10 (total: 28 mins 37 secs) (10 easyconfigs in total)
node4006.donphan.os - Linux RHEL 9.6, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz (cascadelake), 1 x NVIDIA NVIDIA A2, 580.95.05, Python 3.9.21
See https://gist.github.com/boegel/ad0b804e9ed476955e92db7ac9d7c8ad for a full test report.

@boegel boegel merged commit b01ea7a into easybuilders:develop Apr 8, 2026
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