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{bio}[GCC/8.3.0] RAxML-NG v0.9.0 + limit build parallelism for RAxML-NG to avoid build failure#10363

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pescobar merged 8 commits intoeasybuilders:developfrom
boegel:20200409094646_new_pr_RAxML-NG090
Nov 29, 2020
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{bio}[GCC/8.3.0] RAxML-NG v0.9.0 + limit build parallelism for RAxML-NG to avoid build failure#10363
pescobar merged 8 commits intoeasybuilders:developfrom
boegel:20200409094646_new_pr_RAxML-NG090

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@boegel boegel commented Apr 9, 2020 •
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(created using eb --new-pr)

Note: this is not a duplicate of RAxML-NG-0.9.0-gompi-2019b.eb, since it's a non-MPI build of RAxML-NG...

@boegel boegel added the update label Apr 9, 2020
@boegel boegel added this to the 4.x milestone Apr 9, 2020
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boegel commented Apr 9, 2020

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node3112.skitty.os - Linux centos linux 7.7.1908, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/c42eefada66d395b679774d15b3cfd52 for a full test report.

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boegel commented Apr 9, 2020

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
generoso-3 - Linux centos linux 7.6.1810, Intel(R) Xeon(R) CPU E5-2660 v4 @ 2.00GHz, Python 3.6.8
See https://gist.github.com/af0e040b8dac47e4918218a489240c6c for a full test report.

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boegel commented Apr 9, 2020

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node2671.swalot.os - Linux centos linux 7.7.1908, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 2.7.5
See https://gist.github.com/0740e112cde09fff8a1d56d5cb84a7f6 for a full test report.

lexming
lexming reviewed Apr 11, 2020
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Comment thread easybuild/easyconfigs/r/RAxML-NG/RAxML-NG-0.9.0-GCC-8.3.0.eb
Comment thread easybuild/easyconfigs/r/RAxML-NG/RAxML-NG-0.9.0-GCC-8.3.0.eb Outdated
@verdurin verdurin closed this Apr 15, 2020
@verdurin verdurin reopened this Apr 15, 2020
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verdurin commented Apr 15, 2020

@boegel any thoughts on the suggestions from @lexming ?

@branfosj branfosj mentioned this pull request Nov 25, 2020
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boegel commented Nov 29, 2020

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
node3566.doduo.os - Linux RHEL 8.2, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/de4b41ae0ba41a3bf4ad5a76b2100dc6 for a full test report.

@boegel boegel added the bug fix label Nov 29, 2020
@boegel boegel changed the title {bio}[GCC/8.3.0] RAxML-NG v0.9.0 {bio}[GCC/8.3.0] RAxML-NG v0.9.0 + limit build parallelism Nov 29, 2020
@boegel boegel changed the title {bio}[GCC/8.3.0] RAxML-NG v0.9.0 + limit build parallelism {bio}[GCC/8.3.0] RAxML-NG v0.9.0 + limit build parallelism for RAxML-NG to avoid build failure Nov 29, 2020
@boegel boegel modified the milestones: 4.x, 4.3.2 (next release) Nov 29, 2020
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boegel commented Nov 29, 2020

@boegelbot please test @ generoso

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boegelbot commented Nov 29, 2020

@boegel: Request for testing this PR well received on generoso

PR test command 'EB_PR=10363 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_10363 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 10894

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegel commented Nov 29, 2020

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
node2641.swalot.os - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/6151ea4c15a5ce2d73939c0430bb1f3c for a full test report.

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boegelbot commented Nov 29, 2020

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (3 easyconfigs in total)
generoso-c1-s-1 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/d908b747610f335569d2322743535400 for a full test report.

pescobar
pescobar approved these changes Nov 29, 2020
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lgtm

@pescobar pescobar merged commit 78a6460 into easybuilders:develop Nov 29, 2020
@boegel boegel deleted the 20200409094646_new_pr_RAxML-NG090 branch November 29, 2020 11:42
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