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{bio}[intel/2019b] augur v7.0.2, CVXOPT v1.1.9, VCFtools 0.1.16 w/ Python 3.7.4#10405

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Darkless012:20200415175327_new_pr_augur702
Apr 17, 2020
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{bio}[intel/2019b] augur v7.0.2, CVXOPT v1.1.9, VCFtools 0.1.16 w/ Python 3.7.4#10405
boegel merged 9 commits intoeasybuilders:developfrom
Darkless012:20200415175327_new_pr_augur702

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@Darkless012 Darkless012 commented Apr 15, 2020

(created using eb --new-pr)

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adding easyconfigs: augur-7.0.2-intel-2019b-Python-3.7.4.eb, CVXOPT-1…
1232dc7 
….1.9-intel-2019b-Python-3.7.4.eb, matplotlib-2.2.4-intel-2019b-Python-3.7.4.eb, VCFtools-0.1.16-iccifort-2019.5.281.eb
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Comment thread easybuild/easyconfigs/a/augur/augur-7.0.2-intel-2019b-Python-3.7.4.eb Outdated
('RAxML', '8.2.12', '-hybrid-avx2'),
('FastTree', '2.1.11'),
('CVXOPT', '1.1.9', versionsuffix),
('matplotlib', '2.2.4', versionsuffix),
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I suspect that matplotlib 3.x would work just fine as well, despite the script version requirements...

Polled for info via nextstrain/augur#538

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Comment thread easybuild/easyconfigs/a/augur/augur-7.0.2-intel-2019b-Python-3.7.4.eb Outdated
('VCFtools', '0.1.16'),
('RAxML', '8.2.12', '-hybrid-avx2'),
('FastTree', '2.1.11'),
('CVXOPT', '1.1.9', versionsuffix),
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Ideally, this is updated to latest 1.2.4, but we'll also need to poll whether Augur is compatible with CVXOPT 1.2.x...

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I've reused your wording. Hope you don't mind :)
nextstrain/augur#539

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👍

@boegel boegel added this to the 4.x milestone Apr 15, 2020
@easybuilders easybuilders deleted a comment from boegelbot Apr 16, 2020
@easybuilders easybuilders deleted a comment from boegelbot Apr 16, 2020
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Comment thread easybuild/easyconfigs/a/augur/augur-7.0.2-intel-2019b-Python-3.7.4.eb Outdated
@boegel boegel changed the title {bio}[intel/2019b] augur v7.0.2, CVXOPT v1.1.9, matplotlib v2.2.4, ... w/ Python 3.7.4 {bio}[intel/2019b] augur v7.0.2, CVXOPT v1.1.9, VCFtools 0.1.16 w/ Python 3.7.4 Apr 17, 2020
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boegel commented Apr 17, 2020

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in this PR)
generoso - Linux centos linux 7.6.1810, Intel(R) Xeon(R) CPU E5-2660 v4 @ 2.00GHz, Python 3.6.8
See https://gist.github.com/66ce43c6b9855bd4b08e01f25184935b for a full test report.

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boegel commented Apr 17, 2020

Test report by @boegel
FAILED
Build succeeded for 5 out of 6 (3 easyconfigs in this PR)
node3409.kirlia.os - Linux centos linux 7.7.1908, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz (cascadelake), Python 2.7.5
See https://gist.github.com/31bc8775dcde8f9eef282bbf593e1bd9 for a full test report.

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boegel commented Apr 17, 2020

Test report by @boegel
FAILED
Build succeeded for 5 out of 6 (3 easyconfigs in this PR)
node2454.golett.os - Linux centos linux 7.7.1908, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz (haswell), Python 2.7.5
See https://gist.github.com/026d2d6f040c6416700a5adb45548b14 for a full test report.

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boegel commented Apr 17, 2020

Test report by @boegel
SUCCESS
Build succeeded for 11 out of 11 (3 easyconfigs in this PR)
node3126.skitty.os - Linux centos linux 7.7.1908, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/694af3d525d07088e92c688a5383d1ce for a full test report.

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boegel commented Apr 17, 2020

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in this PR)
node2454.golett.os - Linux centos linux 7.7.1908, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz (haswell), Python 2.7.5
See https://gist.github.com/9853cb681877638761b022bacb914942 for a full test report.

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boegel commented Apr 17, 2020

failed test reports are due to easybuilders/easybuild-framework#3284, not a blocker for this PR...

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boegel commented Apr 17, 2020

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in this PR)
node3409.kirlia.os - Linux centos linux 7.7.1908, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz (cascadelake), Python 2.7.5
See https://gist.github.com/c6bb016be61c221c4dc956a1a892a50f for a full test report.

@boegel boegel removed this from the 4.x milestone Apr 17, 2020
@boegel boegel added this to the next release (4.2.1?) milestone Apr 17, 2020
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boegel commented Apr 17, 2020

Going in, thanks @Darkless012!

@boegel boegel merged commit f661ce6 into easybuilders:develop Apr 17, 2020
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