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add missing SciPy-bundle and Kent_tools (for bedPartition command) dependencies to FLAIR + switch to Kent_tools built from source as dep for FusionCatcher#11057

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lexming merged 5 commits intoeasybuilders:developfrom
boegel:20200803173725_new_pr_FLAIR15
Aug 26, 2020
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add missing SciPy-bundle and Kent_tools (for bedPartition command) dependencies to FLAIR + switch to Kent_tools built from source as dep for FusionCatcher#11057
lexming merged 5 commits intoeasybuilders:developfrom
boegel:20200803173725_new_pr_FLAIR15

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@boegel boegel commented Aug 3, 2020 •
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(created using eb --new-pr)
missing R libraries are added to R and Bioconductor via #11052 and #11053

also requires #11121 (Kent_tools, from source)

@boegel boegel added this to the next release (4.2.3?) milestone Aug 4, 2020
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zao commented Aug 18, 2020

Test report by @zao
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
freja - Linux ubuntu 18.04, x86_64, Intel(R) Core(TM) i7-8700K CPU @ 3.70GHz, Python 2.7.17
See https://gist.github.com/3e561b64a87030571df5c2f8941642a6 for a full test report.

@easybuilders easybuilders deleted a comment from boegelbot Aug 19, 2020
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boegel commented Aug 19, 2020

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (2 easyconfigs in this PR)
node3416.kirlia.os - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz (cascadelake), Python 2.7.5
See https://gist.github.com/8316b6a38b1691824504b2f2b5929c69 for a full test report.

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boegel commented Aug 19, 2020

Test report by @boegel
SUCCESS
Build succeeded for 5 out of 5 (2 easyconfigs in this PR)
node3157.skitty.os - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/13105d21f82ab89de9f9e40ed8cafd9f for a full test report.

@easybuilders easybuilders deleted a comment from boegelbot Aug 21, 2020
@boegel boegel changed the title add missing Kent_tools dependency to FLAIR, required for bedPartition command add missing SciPy-bundle and Kent_tools dependencies to FLAIR, required for bedPartition command Aug 21, 2020
@boegel boegel changed the title add missing SciPy-bundle and Kent_tools dependencies to FLAIR, required for bedPartition command add missing SciPy-bundle and Kent_tools (for bedPartition command) dependencies to FLAIR Aug 21, 2020
@boegel boegel changed the title add missing SciPy-bundle and Kent_tools (for bedPartition command) dependencies to FLAIR add missing SciPy-bundle and Kent_tools (for bedPartition command) dependencies to FLAIR + switch to Kent_tools built from source as dep for FusionCatcher Aug 23, 2020
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boegel commented Aug 23, 2020

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in this PR)
node2312.phanpy.os - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz (haswell), Python 2.7.5
See https://gist.github.com/650525c976b45fc5c9106d76d13683ce for a full test report.

@easybuilders easybuilders deleted a comment from boegelbot Aug 25, 2020
@boegel boegel requested a review from lexming August 25, 2020 21:17
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lexming commented Aug 26, 2020

Test report by @lexming
SUCCESS
Build succeeded for 11 out of 11 (2 easyconfigs in this PR)
node376.hydra.os - Linux centos linux 7.7.1908, x86_64, Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, Python 2.7.5
See https://gist.github.com/450b60f3e6b9d109f14f1ff6193340d1 for a full test report.

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lexming approved these changes Aug 26, 2020
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LGTM

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lexming commented Aug 26, 2020

Going in, thanks @boegel !

@lexming lexming merged commit 8273fea into easybuilders:develop Aug 26, 2020
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lexming commented Aug 26, 2020

Test report by @lexming
SUCCESS
Build succeeded for 10 out of 10 (2 easyconfigs in this PR)
node126.hydra.os - Linux centos linux 7.7.1908, x86_64, Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz, Python 2.7.5
See https://gist.github.com/de7bfdd6bf38884c3becb72e8f19e014 for a full test report.

@boegel boegel deleted the 20200803173725_new_pr_FLAIR15 branch August 26, 2020 17:16
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