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{bio}[intel/2020a] chewBBACA v2.5.5, Biopython v1.78, BLAST+ v2.10.1, ... w/ Python 3.8.2#11418

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boegel merged 2 commits intoeasybuilders:developfrom
zarybnicky:20201001170345_new_pr_Biopython178
Oct 15, 2020
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{bio}[intel/2020a] chewBBACA v2.5.5, Biopython v1.78, BLAST+ v2.10.1, ... w/ Python 3.8.2#11418
boegel merged 2 commits intoeasybuilders:developfrom
zarybnicky:20201001170345_new_pr_Biopython178

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@zarybnicky zarybnicky commented Oct 1, 2020

(created using eb --new-pr)

adding easyconfigs: Biopython-1.78-intel-2020a-Python-3.8.2.eb, BLAST…
7ab24ff 
…+-2.10.1-iimpi-2020a.eb, chewBBACA-2.5.5-intel-2020a-Python-3.8.2.eb, ClustalW2-2.1-intel-2020a.eb, MAFFT-7.471-iimpi-2020a-with-extensions.eb and patches: BLAST+-2.10.1_fix-64-icc.patch
@boegel boegel added this to the 4.x milestone Oct 1, 2020
@boegel boegel added the new label Oct 1, 2020
@boegel boegel changed the title {bio}[intel/2020a] Biopython v1.78, BLAST+ v2.10.1, chewBBACA v2.5.5, ... w/ Python 3.8.2 {bio}[intel/2020a] chewBBACA v2.5.5, Biopython v1.78, BLAST+ v2.10.1, ... w/ Python 3.8.2 Oct 1, 2020
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Comment thread easybuild/easyconfigs/c/chewBBACA/chewBBACA-2.5.5-intel-2020a-Python-3.8.2.eb Outdated
Comment thread easybuild/easyconfigs/b/Biopython/Biopython-1.78-intel-2020a-Python-3.8.2.eb Outdated
Comment thread easybuild/easyconfigs/c/chewBBACA/chewBBACA-2.5.5-intel-2020a-Python-3.8.2.eb Outdated
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zarybnicky commented Oct 1, 2020

This is WIP, I guess, I'll try and add a test script tomorrow.

@zarybnicky zarybnicky changed the title {bio}[intel/2020a] chewBBACA v2.5.5, Biopython v1.78, BLAST+ v2.10.1, ... w/ Python 3.8.2 WIP: {bio}[intel/2020a] chewBBACA v2.5.5, Biopython v1.78, BLAST+ v2.10.1, ... w/ Python 3.8.2 Oct 1, 2020
@easybuilders easybuilders deleted a comment from boegelbot Oct 14, 2020
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boegel commented Oct 15, 2020

@boegelbot please test @ generoso

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boegelbot commented Oct 15, 2020

@boegel: Request for testing this PR well received on generoso

PR test command 'EB_PR=11418 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_11418 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 8123

Test results coming soon (I hope)...

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- notification for comment with ID 708986139 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegel commented Oct 15, 2020

Test report by @boegel
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in this PR)
node3112.skitty.os - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/9242c4f4db3f3b57481cf7c979a1f41e for a full test report.

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boegelbot commented Oct 15, 2020

Test report by @boegelbot
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
generoso-x-5 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/ec37023aec44dc79a69b18c6aa0e13cc for a full test report.

@boegel boegel changed the title WIP: {bio}[intel/2020a] chewBBACA v2.5.5, Biopython v1.78, BLAST+ v2.10.1, ... w/ Python 3.8.2 {bio}[intel/2020a] chewBBACA v2.5.5, Biopython v1.78, BLAST+ v2.10.1, ... w/ Python 3.8.2 Oct 15, 2020
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boegel commented Oct 15, 2020

@zarybnicky The sanity check you have in place is good enough for now, I don't think there's an easy way to do a "real" test of chewBBACA in the sanity check that isn't excessive long...

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boegel commented Oct 15, 2020

Going in, thanks @zarybnicky!

@boegel boegel merged commit 149ef75 into easybuilders:develop Oct 15, 2020
@boegel boegel modified the milestones: 4.x, next release (4.3.1) Oct 15, 2020
@zarybnicky zarybnicky deleted the 20201001170345_new_pr_Biopython178 branch October 15, 2020 12:25
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