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remove extentions from R-bundle-Bioconductor 3.11 easyconfigs that are also included in R 4.0.0#11429

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boegel merged 1 commit intoeasybuilders:developfrom
branfosj:patch-1
Oct 6, 2020
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remove extentions from R-bundle-Bioconductor 3.11 easyconfigs that are also included in R 4.0.0#11429
boegel merged 1 commit intoeasybuilders:developfrom
branfosj:patch-1

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@branfosj branfosj commented Oct 4, 2020 •
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All of these are in https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/r/R/R-4.0.0-foss-2020a.eb so we can remove them from here.

@branfosj branfosj changed the title R-bundle-Bioconductor - deduplicate extenstions in R ec R-bundle-Bioconductor - remove extenstions also in R ec Oct 4, 2020
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branfosj commented Oct 4, 2020

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
bear-pg0211u03a.bear.cluster - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/21eaa37d2f83a3e19360e5bfdb4bb3ca for a full test report.

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verdurin commented Oct 5, 2020

@boegelbot please test @ generoso

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boegelbot commented Oct 5, 2020

@verdurin: Request for testing this PR well received on generoso

PR test command 'EB_PR=11429 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_11429 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 8011

Test results coming soon (I hope)...

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- notification for comment with ID 703561717 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Oct 5, 2020

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in this PR)
generoso-x-3 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/75e134b20a5c505589d048df610a865b for a full test report.

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branfosj commented Oct 5, 2020 •
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Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in this PR)
generoso-x-3 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/75e134b20a5c505589d048df610a865b for a full test report.

https://gist.github.com/boegelbot/b5050c4c3fbea8db49c8f301b86191a3 shows the issue to be

ERROR: dependency JADE is not available for package

JADE is in R-4.0.0-foss-2020a.eb: https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/r/R/R-4.0.0-foss-2020a.eb#L2532

@boegelbot was also building tha R ec at the same time (#11428 (comment)) which may have caused this issue.

@boegel boegel changed the title R-bundle-Bioconductor - remove extenstions also in R ec R-bundle-Bioconductor - remove extentions also in R ec Oct 5, 2020
@boegel boegel changed the title R-bundle-Bioconductor - remove extentions also in R ec R-bundle-Bioconductor - remove extentions also in R 4.0.0 ec Oct 5, 2020
@boegel boegel added this to the next release (4.3.1) milestone Oct 5, 2020
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boegel commented Oct 5, 2020

@boegelbot please test @ generoso

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boegelbot commented Oct 5, 2020

@boegel: Request for testing this PR well received on generoso

PR test command 'EB_PR=11429 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_11429 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 8034

Test results coming soon (I hope)...

Details

- notification for comment with ID 703854169 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Oct 5, 2020

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
generoso-x-2 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/91887d1915d958d9d4122cd14ccc3732 for a full test report.

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boegel commented Oct 6, 2020

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node3404.kirlia.os - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz (cascadelake), Python 2.7.5
See https://gist.github.com/00f5d45e4177221d83a2f60467d1c5c3 for a full test report.

@boegel boegel changed the title R-bundle-Bioconductor - remove extentions also in R 4.0.0 ec remove extentions from R-bundle-Bioconductor 3.11 easyconfigs that are also included in R 4.0.0 Oct 6, 2020
boegel
boegel approved these changes Oct 6, 2020
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lgtm

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boegel commented Oct 6, 2020

Going in, thanks @branfosj!

@boegel boegel merged commit 33a795a into easybuilders:develop Oct 6, 2020
@branfosj branfosj deleted the patch-1 branch October 6, 2020 11:13
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