{bio}[intel/2020a] Metagenome-Atlas v2.4.3 w/ Python 3.8.2#11620
Conversation
…b and patches: Metagenome-Atlas-2.4.3_remove-hardcoded-conda.patch
…asyconfigs into 20201105114545_new_pr_Metagenome-Atlas243
boegel
left a comment
There was a problem hiding this comment.
@Darkless012 Please include sanity_pip_check in the easyconfig, which will raise a couple of missing extensions:
== 2020-11-24 09:20:17,121 easyblock.py:3335 WARNING build failed (first 300 chars): cmd "pip check" exited with exit code 1 and output:
ruamel-yaml 0.16.12 requires ruamel-yaml-clib, which is not installed.
plotly 4.11.0 requires retrying, which is not installed.
cookiecutter 1.7.2 has requirement poyo>=0.5.0, but you have poyo 0.2.0.
Also include a comment + mention author on top of the patch.
And close easybuilders/easybuild-easyblocks#2219, since it's no longer needed now PythonBundle is used?
|
@boegelbot please test @ generoso |
|
@boegel: Request for testing this PR well received on generoso PR test command '
Test results coming soon (I hope)... Details- notification for comment with ID 739776819 processed Message to humans: this is just bookkeeping information for me, |
|
Test report by @boegelbot |
|
Test report by @boegel |
|
Test report by @boegel |
|
Going in, thanks @Darkless012! |
(created using
eb --new-pr)requires easyblock:
add custom easyblock for Metagenome-Atlas easybuild-easyblocks#2219(no longer needed, now usingPythonBundle)requires easyconfigs:
{bio}[iccifort/2020.1.217] BBMap v38.87 #11617(BBMap){bio,tools}[iccifort/2020.1.217,intel/2020a] CheckM v1.1.3, Pysam v0.16.0.1 w/ Python 2.7.18 + 3.8.2 #11618(CheckM){tools}[intel/2020a] snakemake v5.26.1 (+ GitPython v3.1.9) w/ Python 3.8.2 #11619(snakemake)