You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
While testing #11750 I hit an error connected with the installation of parasail (the python library) failing to install parasail - see #11750 (comment)
This:
Switches parasail-2.4.1-foss-2019b.eb to parasail-2.4.1-GCC-8.3.0.eb
Switches the Bonito ecs to use the python-parasail and tqdm
To be able to use the tqdm dep, I had to add the 'preinstallopts': "sed -i 's/==/>=/g' requirements.txt && ", to the Bonito 0.1.0. This is already in the newer ecs.
For parasail, we already install the newer version at the iccifort level (parasail-2.4.2-iccifort-2020.1.217.eb) and I cannot see anything in the install or documentation that suggests that it requires to be at foss/fosscuda instead of dropping to GCC.
branfosj
changed the title
Bonito - switch to using separate python-parasail and tqdm
Bonito - switch to using python-parasail and tqdm dependencies
Dec 28, 2020
Test report by @boegelbot SUCCESS
Build succeeded for 7 out of 7 (7 easyconfigs in total)
generoso-c1-s-1 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/33569ee3de613dee1f4f03895f95e062 for a full test report.
Test report by @branfosj SUCCESS
Build succeeded for 7 out of 7 (7 easyconfigs in total)
bear-pg0212u15b.bear.cluster - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2640 v4 @ 2.40GHz (broadwell), Python 3.6.8
See https://gist.github.com/932141f81fedde6aae457cc0d2d4ef1a for a full test report.
boegel
changed the title
Bonito - switch to using python-parasail and tqdm dependencies
switch to using python-parasail and tqdm dependencies in Bonito easyconfigs
Dec 29, 2020
Test report by @boegel SUCCESS
Build succeeded for 7 out of 7 (7 easyconfigs in total)
node3300.joltik.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6242 CPU @ 2.80GHz (cascadelake), Python 3.6.8
See https://gist.github.com/6a6b0392592871b05f7fd625527ac7fd for a full test report.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
(created using
eb --new-pr)While testing #11750 I hit an error connected with the installation of parasail (the python library) failing to install parasail - see #11750 (comment)
This:
parasail-2.4.1-foss-2019b.ebtoparasail-2.4.1-GCC-8.3.0.ebpython-parasail-1.2-fosscuda-2019b-Python-3.7.4.ebBonitoecs to use thepython-parasailandtqdmTo be able to use the
tqdmdep, I had to add the'preinstallopts': "sed -i 's/==/>=/g' requirements.txt && ",to the Bonito 0.1.0. This is already in the newer ecs.For parasail, we already install the newer version at the
iccifortlevel (parasail-2.4.2-iccifort-2020.1.217.eb) and I cannot see anything in the install or documentation that suggests that it requires to be atfoss/fosscudainstead of dropping toGCC.