{tools}[fosscuda/2020b] cell2location v0.05-alpha, dill v0.3.3, Seaborn 0.10.0, ... w/ Python 3.8.6 by deniskristak · Pull Request #12448 · easybuilders/easybuild-easyconfigs

deniskristak · 2021-03-22T16:21:26Z

(created using eb --new-pr)

requires ~~#12446~~ (igraph co) + ~~#12447~~ (PyMC3)

….8.6.eb, dill-0.3.3-fosscuda-2020b.eb, IPython-7.21.0-fosscuda-2020b-Python-3.7.4.eb, netCDF-4.7.4-fosscuda-2020b.eb, request-2.88.1-fosscuda-2020b-nodejs-12.19.0.eb, Seaborn-0.11.1-fosscuda-2020b-Python-3.8.6.eb, statsmodels-0.12.1-fosscuda-2020b.eb, umap-learn-0.4.6-fosscuda-2020b-Python-3.8.6.eb

deniskristak · 2021-03-24T09:09:54Z

@boegel think previous 2 PRs connected to cell2location issue https://github.com/hpcugent/eb_inuits/issues/163 contain all required dependencies (thanks to which this PR's tests wont fail)

…ndency version(suffix)

…ocation

…fosscuda/2020b, existing easyconfig with gompic/2020b suffices

boegel · 2021-04-07T19:47:09Z

Test report by @boegel
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
node3305.joltik.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6242 CPU @ 2.80GHz (cascadelake), Python 3.6.8
See https://gist.github.com/39b777dcc4cfbe01d750fae5b14b0cf5 for a full test report.

…LLVM 10.0.1

… dependency

boegelbot · 2021-04-07T21:06:38Z

Test report by @boegelbot
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
generoso-c1-s-1 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/937d5af16ee6aee8b668b5e1b0c0b3bd for a full test report.

removed obsolete file

…cy, use proper numba dependency

boegel · 2021-05-18T14:55:42Z

@boegelbot please test @ generoso

boegelbot · 2021-05-18T15:00:10Z

@boegel: Request for testing this PR well received on generoso

PR test command 'EB_PR=12448 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_12448 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 17249

Test results coming soon (I hope)...

Details

- notification for comment with ID 843242629 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

…ownload

boegelbot · 2021-05-18T15:21:17Z

Test report by @boegelbot
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
generoso-c1-s-1 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/18ba24a55f58a33a6184fb82b1ff5f41 for a full test report.

boegel · 2021-05-18T15:43:25Z

Test report by @boegel
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
node3307.joltik.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6242 CPU @ 2.80GHz (cascadelake), Python 3.6.8
See https://gist.github.com/437e65439a070504a1acabfade56253f for a full test report.

branfosj · 2021-05-21T09:03:57Z

easybuilders/easybuild-framework#3692 should fix

Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 990, in test_changed_files_pull_request
    self.check_python_packages(changed_ecs, added_ecs_filenames)
  File "test/easyconfigs/easyconfigs.py", line 802, in check_python_packages
    self.fail('\n'.join(failing_checks))
AssertionError: 'source_urls' should not be defined in exts_default_options when using the default value in cell2location-0.05-alpha-fosscuda-2020b.eb

boegel

lgtm

boegel · 2021-05-22T14:48:43Z

Going in, thanks @deniskristak!

deniskristak and others added 7 commits March 22, 2021 18:20

changes acc. to tests

b08fde5

Delete cell2location-v0.05-alpha-fosscuda-2020b-Python-3.8.6.eb

835e449

Delete IPython-7.21.0-fosscuda-2020b-Python-3.7.4.eb

48b315a

changes acc. to tests

7cda79a

Delete Seaborn-0.11.1-fosscuda-2020b-Python-3.8.6.eb

aa074be

Delete umap-learn-0.4.6-fosscuda-2020b-Python-3.8.6.eb

e77b3f2

This comment has been minimized.

Sign in to view

style checks

5eb6b17

boegel changed the title ~~{tools}[fosscuda/2020b] cell2location vv0.05-alpha, dill v0.3.3, IPython v7.21.0, ... w/ Python 3.7.4 + 3.8.6~~ {tools}[fosscuda/2020b] cell2location v0.05-alpha, dill v0.3.3, IPython v7.21.0, ... w/ Python 3.7.4 + 3.8.6 Mar 30, 2021

boegel added 3 commits March 31, 2021 12:08

drop 'v' from cell2location version + fix leidenalg and hyperopt depe…

a4e9ea9

…ndency version(suffix)

Merge branch 'develop' into 20210322172017_new_pr_cell2locationv005alpha

67daa90

stick to Seaborn 0.10.1 + use numba 0.52.0 as dependencies for cell2l…

78c8c57

…ocation

boegel added this to the 4.x milestone Apr 7, 2021

remove PYPI_SOURCE source URLs, no longer needed

fdf0fc2

easybuilders deleted a comment from boegelbot Apr 7, 2021

boegel added 2 commits April 7, 2021 20:59

remove default sanity_check_paths from umap-learn easyconfig

52edb3c

stick to GCCcore toolchain for dill + remove netCDF easyconfig using …

fe25360

…fosscuda/2020b, existing easyconfig with gompic/2020b suffices

boegel added new update labels Apr 7, 2021

boegel changed the title ~~{tools}[fosscuda/2020b] cell2location v0.05-alpha, dill v0.3.3, IPython v7.21.0, ... w/ Python 3.7.4 + 3.8.6~~ {tools}[fosscuda/2020b] cell2location v0.05-alpha, dill v0.3.3, Seaborn 0.10.0, ... w/ Python 3.8.6 Apr 7, 2021

boegel added 3 commits April 7, 2021 21:17

add exception for umap-learn depending on older LLVM 10.0.1

74a8002

Merge branch 'develop' into 20210322172017_new_pr_cell2locationv005alpha

ca5254f

fix indent

e3a4278

boegel added 2 commits April 7, 2021 21:50

also add exception for cell2location depending (indirectly) on older …

7dddaaf

…LLVM 10.0.1

remove nose extension from cell2location easyconfig + add Bison build…

7651116

… dependency

deniskristak and others added 4 commits April 12, 2021 15:02

style checks

659338c

Delete cell2location-0.05-alpha-fosscuda-2020b.eb

ac0354a

removed obsolete file

tests

661a824

tests

39ef5d2

easybuilders deleted a comment from boegelbot Apr 27, 2021

deniskristak and others added 6 commits April 28, 2021 08:45

removing source_urls

bac7d08

Merge branch 'develop' into 20210322172017_new_pr_cell2locationv005alpha

b56124d

fix leidenalg and hyperopt deps for cell2location

979f413

remove unused Seaborn easyconfig

6491215

stick to Java/11 as dep for cell2location

b31e1e6

drop 'v' from cell2location version, add missing Bison build dependen…

d2bb177

…cy, use proper numba dependency

add missing source URL for cell2location + rename source tarball on d…

0a10afa

…ownload

easybuilders deleted a comment from boegelbot May 21, 2021

Merge branch 'develop' into 20210322172017_new_pr_cell2locationv005alpha

84bd53f

boegel added 2 commits May 21, 2021 21:59

Merge branch 'develop' into 20210322172017_new_pr_cell2locationv005alpha

6441d2b

Merge branch 'develop' into 20210322172017_new_pr_cell2locationv005alpha

412b445

easybuilders deleted a comment from boegelbot May 21, 2021

also add umap-learn to list of exceptions for using LLVM 10.0.1 as dep

f744e24

easybuilders deleted a comment from boegelbot May 22, 2021

boegel approved these changes May 22, 2021

View reviewed changes

boegel merged commit 3be33b9 into easybuilders:develop May 22, 2021

boegel modified the milestones: 4.x, 4.4.0 Jun 10, 2021

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

{tools}[fosscuda/2020b] cell2location v0.05-alpha, dill v0.3.3, Seaborn 0.10.0, ... w/ Python 3.8.6#12448

{tools}[fosscuda/2020b] cell2location v0.05-alpha, dill v0.3.3, Seaborn 0.10.0, ... w/ Python 3.8.6#12448
boegel merged 34 commits intoeasybuilders:developfrom
deniskristak:20210322172017_new_pr_cell2locationv005alpha

deniskristak commented Mar 22, 2021 •

edited by boegel

Loading

Uh oh!

This comment has been minimized.

deniskristak commented Mar 24, 2021

Uh oh!

boegel commented Apr 7, 2021

Uh oh!

boegelbot commented Apr 7, 2021

Uh oh!

boegel commented May 18, 2021

Uh oh!

boegelbot commented May 18, 2021

Uh oh!

boegelbot commented May 18, 2021

Uh oh!

boegel commented May 18, 2021

Uh oh!

branfosj commented May 21, 2021

Uh oh!

boegel left a comment

Uh oh!

boegel commented May 22, 2021

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

4 participants

Conversation

deniskristak commented Mar 22, 2021 • edited by boegel Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

This comment has been minimized.

deniskristak commented Mar 24, 2021

Uh oh!

boegel commented Apr 7, 2021

Uh oh!

boegelbot commented Apr 7, 2021

Uh oh!

boegel commented May 18, 2021

Uh oh!

boegelbot commented May 18, 2021

Uh oh!

boegelbot commented May 18, 2021

Uh oh!

boegel commented May 18, 2021

Uh oh!

branfosj commented May 21, 2021

Uh oh!

boegel left a comment

Choose a reason for hiding this comment

Uh oh!

boegel commented May 22, 2021

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

4 participants

deniskristak commented Mar 22, 2021 •

edited by boegel

Loading