fix numpy tests for recent SciPy-bundle easyconfig on POWER by Flamefire · Pull Request #12481 · easybuilders/easybuild-easyconfigs

Flamefire · 2021-03-29T10:54:42Z

(created using eb --new-pr)

verdurin · 2021-03-29T16:12:19Z

Test build works for me with SciPy-bundle-2019.10-fosscuda-2019b-Python-3.7.4.eb, just not able to upload a report from that node currently.

Flamefire · 2021-03-29T21:15:07Z

Test report by @Flamefire
FAILED
Build succeeded for 9 out of 11 (11 easyconfigs in total)
taurusa6 - Linux centos linux 7.7.1908, x86_64, Intel(R) Xeon(R) CPU E5-2603 v4 @ 1.70GHz (broadwell), Python 2.7.5
See https://gist.github.com/639cd1aa179edf0d04756c9a3d35c01e for a full test report.

Flamefire · 2021-03-29T22:45:49Z

Test report by @Flamefire
FAILED
Build succeeded for 16 out of 28 (11 easyconfigs in total)
taurusml24 - Linux RHEL 7.6, POWER, 8335-GTX (power9le), Python 2.7.5
See https://gist.github.com/642ab70a106eaa87b2e384f12d28db13 for a full test report.

smoors · 2021-03-30T13:16:54Z

@boegelbot: please test @ generoso

boegelbot · 2021-03-30T13:20:08Z

@smoors: Request for testing this PR well received on generoso

PR test command 'EB_PR=12481 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_12481 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 16457

Test results coming soon (I hope)...

Details

- notification for comment with ID 810230480 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegel

lgtm

Flamefire · 2021-03-30T13:24:32Z

FYI: Tests are being rerun now after fixing the patch and getting GDRcopy installed via the CUDA easyblock change. There might be a semi-expected failure on POWER and 2019a due to know issues with OpenBLAS, but lets see

boegel · 2021-03-30T16:41:21Z

Test reports from CentOS 7 (Haswell) and RHEL8 (Rome) coming up from my side too...

Flamefire · 2021-03-30T16:52:12Z

Test report by @Flamefire
FAILED
Build succeeded for 8 out of 11 (11 easyconfigs in total)
taurusml6 - Linux RHEL 7.6, POWER, 8335-GTX (power9le), Python 2.7.5
See https://gist.github.com/c86966bf73a709420aac13476429dedd for a full test report.

boegelbot · 2021-03-30T19:11:30Z

Test report by @boegelbot
FAILED
Build succeeded for 10 out of 11 (11 easyconfigs in total)
generoso-c1-s-1 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/f2cf2350ff34ce1594bb9ef09507cf6f for a full test report.

Flamefire · 2021-03-30T21:25:46Z

Test report by @Flamefire
SUCCESS
Build succeeded for 11 out of 11 (11 easyconfigs in total)
taurusa5 - Linux centos linux 7.7.1908, x86_64, Intel(R) Xeon(R) CPU E5-2603 v4 @ 1.70GHz (broadwell), Python 2.7.5
See https://gist.github.com/0b3b12941b115a36bf008e507cc97a9a for a full test report.

boegel · 2021-03-30T21:39:46Z

Test report by @boegel
FAILED
Build succeeded for 10 out of 11 (11 easyconfigs in total)
node3501.doduo.os - Linux RHEL 8.2, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/80878612c4a7c57455de42a4e2cef362 for a full test report.

boegel · 2021-03-30T23:54:43Z

Test report by @boegel
SUCCESS
Build succeeded for 11 out of 11 (11 easyconfigs in total)
node2609.swalot.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/7318a5e375377de355708dd7d99c9b6b for a full test report.

boegel · 2021-03-31T08:30:17Z

@boegelbot please test @ generoso
EB_ARGS="SciPy-bundle-2019.10-fosscuda-2019b-Python-2.7.16.eb"

Flamefire · 2021-03-31T08:31:52Z

@boegel Your CUDA/10.1.105-GCC-8.2.0-2.31.1 might be broken.
As mentioned, the 2019a failures are kinda expected. I'd even vote to bump the OpenBLAS version for PPC for that TC
The fail with Python 2 2020a is related to numpy/numpy#7601 (comment) where gcc with -O1 -mcpu=power9 miscompiles a loop
Edit: Our ECs have a patch for that issue. So this can be merged from my side (not rerunning the lengthy test for this)

boegelbot · 2021-03-31T08:35:06Z

@boegel: Request for testing this PR well received on generoso

PR test command 'EB_PR=12481 EB_ARGS="SciPy-bundle-2019.10-fosscuda-2019b-Python-2.7.16.eb" /apps/slurm/default/bin/sbatch --job-name test_PR_12481 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 16470

Test results coming soon (I hope)...

Details

- notification for comment with ID 810882672 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2021-03-31T09:00:10Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
generoso-c1-s-1 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/915171591eb1df23ce6addb50ff5d363 for a full test report.

branfosj · 2021-03-31T12:45:35Z

As mentioned, the 2019a failures are kinda expected. I'd even vote to bump the OpenBLAS version for PPC for that TC
The fail with Python 2 2020a is related to numpy/numpy#7601 (comment) where gcc with -O1 -mcpu=power9 miscompiles a loop
Edit: Our ECs have a patch for that issue. So this can be merged from my side (not rerunning the lengthy test for this)

We bumped our OpenBLAS version for 2019a. I think it would be sensible to do so in the main EB repo as well - though I'd be fine with that being a separate PR if we are all in agreement with doing it.

I've set off test reports from our P9 of the 2019b, 2020a, and 2020b Python 3 versions.

branfosj · 2021-03-31T14:12:36Z

Test report by @branfosj
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
bear-pg0306u07a.bear.cluster - Linux RHEL 8.3, POWER, 8335-GTX (power9le), Python 3.6.8
See https://gist.github.com/214223a13bd2ad1d620f02c87662ccba for a full test report.

branfosj · 2021-03-31T14:25:27Z

Test report by @branfosj
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
bear-pg0306u07a.bear.cluster - Linux RHEL 8.3, POWER, 8335-GTX (power9le), Python 3.6.8
See https://gist.github.com/913cfdc3c5214c5c97343c2713f0bf68 for a full test report.

branfosj · 2021-03-31T14:25:57Z

Test report by @branfosj
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
bear-pg0306u07a.bear.cluster - Linux RHEL 8.3, POWER, 8335-GTX (power9le), Python 3.6.8
See https://gist.github.com/13da25a0c1e6b60516b5512bf697ab65 for a full test report.

boegel · 2021-04-01T16:30:40Z

Going in, thanks @Flamefire!

[SciPy-bundle] Fix numpy tests on PPC

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Flamefire added 2 commits March 29, 2021 13:28

Enable pip check

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Use https

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Update patches for changes in numpy 1.19

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boegel approved these changes Mar 30, 2021

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boegel added the bug fix label Mar 30, 2021

boegel added this to the next release (4.3.4?) milestone Mar 30, 2021

boegel changed the title ~~[SciPy-bundle] Fix numpy tests on PPC~~ fix numpy tests for recent SciPy-bundle easyconfig on POWER Mar 31, 2021

boegel merged commit 504844a into easybuilders:develop Apr 1, 2021

Flamefire deleted the 20210329125435_new_pr_SciPy-bundle201903 branch April 1, 2021 17:54

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