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add patch for rhdf5filters extension in Bioconductor 3.12 bundle to fix installation on aarch64#12836

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boegel:20210510120257_new_pr_R-bundle-Bioconductor312
May 10, 2021
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add patch for rhdf5filters extension in Bioconductor 3.12 bundle to fix installation on aarch64#12836
Micket merged 1 commit intoeasybuilders:developfrom
boegel:20210510120257_new_pr_R-bundle-Bioconductor312

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@boegel boegel commented May 10, 2021

(created using eb --new-pr)
fixes #12817

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lgtm

@Micket Micket added the bug fix label May 10, 2021
@Micket Micket added this to the next release (4.3.5?) milestone May 10, 2021
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Micket commented May 10, 2021

@boegelbot please test @ generoso

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boegelbot commented May 10, 2021

@Micket: Request for testing this PR well received on generoso

PR test command 'EB_PR=12836 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_12836 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 17070

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegel commented May 10, 2021

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node2665.swalot.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/0ba81dc90adf5903b2e6647d01de8545 for a full test report.

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Micket commented May 10, 2021

Going in, thanks @boegel!

@Micket Micket merged commit ecb3507 into easybuilders:develop May 10, 2021
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boegel commented May 10, 2021

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
select-pika-c6gd-2xlarge-0001 - Linux centos linux 8.3.2011, AArch64, ARM UNKNOWN (graviton2), Python 3.6.8
See https://gist.github.com/fc80f7138c1ddd62ec8c482bb00442d7 for a full test report.

@boegel boegel deleted the 20210510120257_new_pr_R-bundle-Bioconductor312 branch May 10, 2021 13:15
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boegelbot commented May 10, 2021

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
generoso-c1-s-1 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/4f64c3f0a19fb3cc5531ea0dbe58dd2f for a full test report.

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4.4.0

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rhdf5filters (R-bundle-Bioconductor-3.12-foss-2020b-R-4.0.3.eb) fails to install on aarch64

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