[GCC/4.8.4] goolf/1.7.20 & gompi/1.7.20 (REVIEW) by fgeorgatos · Pull Request #1294 · easybuilders/easybuild-easyconfigs

fgeorgatos · 2015-01-11T11:29:20Z

highlights:

using GCC/4.8.4, for maximum compatibility with 3rd party tools (debuggers, CUDA, intel* [1] [2] [3]... etc)
most recent/updated hwloc, openmpi, openblas
openblas over gcc w. NO_AFFINITY=1 (leave the mess for the resource manager & apps to handle :)

As others, I cannot fully interpret the effect of the last point, until it is tried across several systems...
so, provided "AS-IS" :)

[1] easybuilders/easybuild-framework#635 (comment)
[2] http://docs.nvidia.com/cuda/cuda-getting-started-guide-for-linux/index.html#axzz3RM915wwL
[3] http://docs.roguewave.com/totalview/8.14.1/html/index.html#page/General_TV_Documentation/totalviewpl-platforms.html
[4] http://nl.mathworks.com/support/compilers/R2014b/index.html?sec=glnxa64 # 2015b should be OK
[5] https://www.pgroup.com/products/pgiworkstation.htm
[6] http://docs.cray.com/books/S-9408-1409//S-9408-1409.pdf # N.B. CUDA/5.5 vs GCC/4.9.x
[7] https://openfoamwiki.net/index.php/Installation/Compatibility_Matrix
[8] http://www.reddit.com/r/linux/comments/2br67o/gcc_49_is_doing_some_seriously_crazy_shit

Also, from Installation Guide of Intel Parallel Studio XE 2015:

Linux Developer tools component installed, including gcc, g++ and related tools. (this is
the list of component versions tested by Intel; other versions may or may not work and
are not recommended - please refer to Technical Support if you have questions
o gcc 4.1-4.8
o binutils 2.17-2.24

ref. https://software.intel.com/sites/default/files/managed/14/61/Release_Notes_Studio_XE_2015_L_u3.pdf

Signed-off-by: Fotis Georgatos <[email protected]>

hpcugentbot · 2015-01-11T11:33:48Z

Test PASSed.

boegel · 2015-01-20T13:34:31Z

no need for this trick here, since comp is only used in one place, replace use of comp with ('GCC', '4.8.4')

@boegel: done!

boegel · 2015-01-20T13:35:43Z

@fgeorgatos: tiny remarks, let's see a test report for this from your end?

fgeorgatos · 2015-01-20T13:57:54Z

Test report by @fgeorgatos
SUCCESS
Build succeeded for 9 out of 9
Linux debian 6.0.10, Intel(R) Xeon(R) CPU L5640 @ 2.27GHz, Python 2.6.6
See https://gist.github.com/2a996d6b3925f8a775a5 for a full test report.

boegel · 2015-01-20T14:39:06Z

Test report by @boegel
SUCCESS
Build succeeded for 9 out of 9 (9 easyconfigs in this PR)
Linux SL 6.6, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/579a1e0885f965a607c2 for a full test report.

…onfigs into contrib_goolf-1.6.20

Signed-off-by: Fotis Georgatos <[email protected]>

hpcugentbot · 2015-01-23T08:09:36Z

Test PASSed.

Signed-off-by: Fotis Georgatos <[email protected]>

fgeorgatos · 2015-01-23T08:30:27Z

@boegel: in the meantime, I realised I could bump up the version of numactl at 2.0.10, which I did, via commit d7bb898.

I think that now this toolchain PR is more complete.
Also, I come to realise that toolchain components could benefit from some extra testing (building and running packages atop) which I admit to have not done at the level desired, yet. YMMV.

And, I also got hit by the numactl upstream tarball change, this month:
(do we have now two independent confirmations, to incriminate the source? :-)

$ md5sum ~/.local/easybuild/sources/n/numactl/numactl-2.0.10.tar.gz*682c38305b2596967881f3d77bc3fc9c  /home/users/fgeorgatos/.local/easybuild/sources/n/numactl/numactl-2.0.10.tar.gz
58443c6fe7e67126de07bd86e4d6b825  /home/users/fgeorgatos/.local/easybuild/sources/n/numactl/numactl-2.0.10.tar.gz.OLD
$ ll ~/.local/easybuild/sources/n/numactl/numactl-2.0.10.tar.gz*
-rw-r--r-- 1 fgeorgatos clusterusers  99040 Jan 23 09:10 /home/users/fgeorgatos/.local/easybuild/sources/n/numactl/numactl-2.0.10.tar.gz
-rw-r--r-- 1 fgeorgatos clusterusers 402082 Jan 11 00:13 /home/users/fgeorgatos/.local/easybuild/sources/n/numactl/numactl-2.0.10.tar.gz.OLD

hpcugentbot · 2015-01-23T08:35:17Z

Test PASSed.

…onfigs into contrib_goolf-1.6.20

Signed-off-by: Fotis Georgatos <[email protected]>

boegel · 2015-02-10T09:38:26Z

just use OpenMPI here directly

hpcugentbot · 2015-02-10T09:42:15Z

Refer to this link for build results (access rights to CI server needed):
https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/2299/
Test PASSed.

boegel · 2015-02-10T09:49:44Z

below sources please

Signed-off-by: Fotis Georgatos <[email protected]>

hpcugentbot · 2015-02-10T10:03:31Z

Refer to this link for build results (access rights to CI server needed):
https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/2300/
Test PASSed.

fgeorgatos · 2015-02-10T11:26:41Z

Test report by @fgeorgatos
SUCCESS
Build succeeded for 13 out of 13
Linux debian 6.0.10, Intel(R) Xeon(R) CPU L5640 @ 2.27GHz, Python 2.6.6
See https://gist.github.com/720bdb861d3837d094b4 for a full test report.

fgeorgatos · 2015-02-10T11:34:06Z

Test report by @fgeorgatos
SUCCESS
Build succeeded for 13 out of 13
Linux debian 6.0.10, Intel(R) Xeon(R) CPU L5640 @ 2.27GHz, Python 2.6.6
See https://gist.github.com/ad03bed9b335e825e5f8 for a full test report.

boegel · 2015-02-10T14:26:00Z

Test report by @boegel
FAILED
Build succeeded for 9 out of 13 (13 easyconfigs in this PR)
Linux SL 6.6, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/7674e204a554d7088222 for a full test report.

Signed-off-by: Fotis Georgatos <[email protected]>

hpcugentbot · 2015-02-10T15:37:21Z

Refer to this link for build results (access rights to CI server needed):
https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/2302/
Test PASSed.

boegel · 2015-02-10T15:56:48Z

Test report by @boegel
SUCCESS
Build succeeded for 13 out of 13 (13 easyconfigs in this PR)
Linux SL 6.6, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/9f409059c5c2018350c6 for a full test report.

[GCC/4.8.4] goolf/1.7.20 & gompi/1.7.20 (REVIEW)

boegel · 2015-02-10T17:13:49Z

Thanks @fgeorgatos!

fgeorgatos added 3 commits January 11, 2015 11:32

init gompi-1.6.10 w. OpenMPI/1.8.4-GCC-4.8.4

9c43f96

Signed-off-by: Fotis Georgatos <[email protected]>

init fftw, openblas, scalapack w. gompi/1.6.20

4343d72

Signed-off-by: Fotis Georgatos <[email protected]>

add HPL/2.1 for goolf/1.6.20

e28c188

Signed-off-by: Fotis Georgatos <[email protected]>

fgeorgatos changed the title ~~Contrib goolf/1.6.20, over gompi/1.6.20~~ [GCC/4.8.4] Contrib goolf/1.6.20, over gompi/1.6.20 (REVIEW) Jan 20, 2015

fgeorgatos changed the title ~~[GCC/4.8.4] Contrib goolf/1.6.20, over gompi/1.6.20 (REVIEW)~~ [GCC/4.8.4] goolf/1.6.20 & gompi/1.6.20 (REVIEW) Jan 20, 2015

fgeorgatos mentioned this pull request Jan 20, 2015

Contrib goolf 1.4.20 #932

Closed

boegel reviewed Jan 20, 2015
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boegel mentioned this pull request Jan 20, 2015

small style fix in ScaLAPACK easyconfig fgeorgatos/easybuild-easyconfigs#33

Closed

fgeorgatos added 2 commits January 23, 2015 04:57

Merge branch 'develop' of https://github.com/hpcugent/easybuild-easyc…

d68bf8d

…onfigs into contrib_goolf-1.6.20

drop comp variable

f03619b

Signed-off-by: Fotis Georgatos <[email protected]>

bump in favor of numactl-2.0.10

d7bb898

Signed-off-by: Fotis Georgatos <[email protected]>

fgeorgatos added 3 commits February 10, 2015 09:48

Merge branch 'develop' of https://github.com/hpcugent/easybuild-easyc…

b5b4245

…onfigs into contrib_goolf-1.6.20

bump to hwloc/1.10.1-GCC-4.8.4

46359e8

Signed-off-by: Fotis Georgatos <[email protected]>

bump to libtool/2.4.5

d816469

Signed-off-by: Fotis Georgatos <[email protected]>

boegel reviewed Feb 10, 2015
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Comment thread easybuild/easyconfigs/g/gompi/gompi-1.6.20.eb Outdated

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just use OpenMPI here directly

boegel reviewed Feb 10, 2015
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Comment thread easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb Outdated

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below sources please

update easybuilders#1294 as per comments in PR

3e2c4d5

Signed-off-by: Fotis Georgatos <[email protected]>

fgeorgatos changed the title ~~[GCC/4.8.4] goolf/1.6.20 & gompi/1.6.20 (REVIEW)~~ [GCC/4.8.4] goolf/1.7.20 & gompi/1.7.20 (REVIEW) Feb 10, 2015

add M4 as builddep

9b3aaff

Signed-off-by: Fotis Georgatos <[email protected]>

boegel added a commit that referenced this pull request Feb 10, 2015

Merge pull request #1294 from fgeorgatos/contrib_goolf-1.6.20

261362a

[GCC/4.8.4] goolf/1.7.20 & gompi/1.7.20 (REVIEW)

boegel merged commit 261362a into easybuilders:develop Feb 10, 2015

fgeorgatos deleted the contrib_goolf-1.6.20 branch February 16, 2015 22:11

fgeorgatos mentioned this pull request Feb 17, 2015

{toolchains} add [Clang/3.6.0] and deps, and toolchains above it, aligned with goolf/1.7.20 (REVIEW) #1410

Closed

boegel mentioned this pull request Sep 6, 2016

add goolf 1.7.10 + HPL + compatible utils #1133

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fgeorgatos commented Jan 11, 2015 •

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